Variant report

Variant	rs7158630
Chromosome Location	chr14:103838343-103838344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:103825142..103827510-chr14:103836873..103839031,2	MCF-7	breast:
2	chr14:103819429..103822833-chr14:103836340..103840943,4	MCF-7	breast:
3	chr14:103811082..103813632-chr14:103837787..103840211,3	K562	blood:
4	chr14:103800531..103803016-chr14:103837222..103839153,2	MCF-7	breast:
5	chr14:103799041..103818802-chr14:103836567..103862153,82	K562	blood:
6	chr14:103837532..103839266-chr14:103865081..103866860,2	MCF-7	breast:
7	chr14:103836563..103839985-chr14:103850679..103852849,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28634103	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28786172	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6575980	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7144155	1.00[AMR][1000 genomes]
rs7157565	1.00[AMR][1000 genomes]
rs73359941	1.00[AMR][1000 genomes]
rs73359942	1.00[AMR][1000 genomes]
rs73359945	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359960	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359967	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042714	chr14:103085298-103860730	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1049747	chr14:103126148-103955984	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
3	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
4	nsv9168	chr14:103531729-103913306	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103828400-103838600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr14:103834600-103838600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr14:103834800-103838400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:103835000-103838400	Weak transcription	NHLF	lung
5	chr14:103837600-103839600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:103837600-103839800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:103837600-103839800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:103837600-103840000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:103838200-103838800	Enhancers	Hela-S3	cervix
10	chr14:103838200-103840000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:103838200-103840000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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