Variant report

Variant	rs73359942
Chromosome Location	chr14:103825252-103825253
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28634103	1.00[AMR][1000 genomes]
rs28786172	1.00[AMR][1000 genomes]
rs6575980	1.00[AMR][1000 genomes]
rs7144155	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157565	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158630	1.00[AMR][1000 genomes]
rs73359941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359945	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359960	1.00[AMR][1000 genomes]
rs73359967	1.00[AMR][1000 genomes]
rs73359968	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042714	chr14:103085298-103860730	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1049747	chr14:103126148-103955984	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
3	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
4	nsv9168	chr14:103531729-103913306	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103822400-103826800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:103822600-103827000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:103822600-103828200	Weak transcription	A549	lung
4	chr14:103822800-103828200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:103822800-103828200	Weak transcription	Dnd41	blood
6	chr14:103823000-103827600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr14:103823000-103827800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr14:103823600-103826400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:103823800-103826600	Weak transcription	HepG2	liver
10	chr14:103823800-103827000	Weak transcription	Hela-S3	cervix
11	chr14:103823800-103828000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:103824400-103826200	Weak transcription	K562	blood
13	chr14:103824400-103827800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:103824600-103827800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:103824800-103827400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:103825000-103827600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:103825200-103827000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:103825200-103827600	Weak transcription	HMEC	breast
19	chr14:103825200-103827600	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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