Variant report

Variant	rs28798172
Chromosome Location	chr18:30744626-30744627
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16964290	1.00[AFR][1000 genomes]
rs16964330	0.89[AFR][1000 genomes]
rs73417497	1.00[AFR][1000 genomes]
rs73419442	1.00[AFR][1000 genomes]
rs73419484	0.89[AFR][1000 genomes]
rs73419495	0.89[AFR][1000 genomes]
rs73419983	0.85[AFR][1000 genomes]
rs9944933	0.85[AFR][1000 genomes]
rs9946226	0.89[AFR][1000 genomes]
rs9948185	0.85[AFR][1000 genomes]
rs9956866	1.00[AFR][1000 genomes]
rs9959761	1.00[AFR][1000 genomes]
rs9959853	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1058332	chr18:30587430-30775498	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30741600-30748800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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