Variant report

Variant	rs9944933
Chromosome Location	chr18:30782275-30782276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16964290	0.85[AFR][1000 genomes]
rs16964330	0.95[AFR][1000 genomes]
rs28798172	0.85[AFR][1000 genomes]
rs73417497	0.85[AFR][1000 genomes]
rs73419442	0.85[AFR][1000 genomes]
rs73419484	0.95[AFR][1000 genomes]
rs73419495	0.95[AFR][1000 genomes]
rs73419983	1.00[AFR][1000 genomes]
rs9948185	1.00[AFR][1000 genomes]
rs9956866	0.85[AFR][1000 genomes]
rs9959761	0.85[AFR][1000 genomes]
rs9959853	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2753661	chr18:30769502-30854602	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30781000-30782600	Enhancers	Dnd41	blood
2	chr18:30781600-30782600	Enhancers	Primary T cells from cord blood	blood
3	chr18:30781600-30785600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr18:30781800-30785000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr18:30781800-30785200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr18:30781800-30785600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr18:30781800-30785800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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