Variant report

Variant	rs73417497
Chromosome Location	chr18:30695845-30695846
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16964290	1.00[AFR][1000 genomes]
rs16964330	0.89[AFR][1000 genomes]
rs28798172	1.00[AFR][1000 genomes]
rs73419442	1.00[AFR][1000 genomes]
rs73419484	0.89[AFR][1000 genomes]
rs73419495	0.89[AFR][1000 genomes]
rs73419983	0.85[AFR][1000 genomes]
rs9944933	0.85[AFR][1000 genomes]
rs9946226	0.89[AFR][1000 genomes]
rs9948185	0.85[AFR][1000 genomes]
rs9956866	1.00[AFR][1000 genomes]
rs9959761	1.00[AFR][1000 genomes]
rs9959853	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1058332	chr18:30587430-30775498	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30694800-30696400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr18:30695400-30696800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:30695600-30696200	Enhancers	Dnd41	blood
4	chr18:30695600-30696400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr18:30695600-30697000	Enhancers	Stomach Mucosa	stomach
6	chr18:30695800-30696200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr18:30695800-30696200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr18:30695800-30697000	Weak transcription	Sigmoid Colon	Sigmoid Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links