Variant report

Variant	rs28800563
Chromosome Location	chr16:47372151-47372152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13334125	1.00[AFR][1000 genomes]
rs9932910	1.00[AFR][1000 genomes]
rs9933076	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1059763	chr16:47147194-47373834	ZNF genes & repeats Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv916572	chr16:47227786-47646103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv933151	chr16:47236330-47646103	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	esv2757637	chr16:47261512-47595005	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv2758644	chr16:47261512-47606287	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv1060396	chr16:47264261-47469345	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv428656	chr16:47316866-47469918	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2758423	chr16:47316866-47606287	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv427983	chr16:47316866-47606287	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv533068	chr16:47354593-47559639	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	nsv833217	chr16:47358148-47527655	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47334600-47372800	Weak transcription	Primary T cells from cord blood	blood
2	chr16:47368800-47409000	Weak transcription	HepG2	liver
3	chr16:47371000-47372400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr16:47371200-47372200	ZNF genes & repeats	Aorta	Aorta
5	chr16:47371200-47372200	ZNF genes & repeats	Fetal Muscle Leg	muscle
6	chr16:47371400-47372200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr16:47371400-47372400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
8	chr16:47371400-47372400	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr16:47371400-47372400	ZNF genes & repeats	Dnd41	blood
10	chr16:47371400-47373000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
11	chr16:47371400-47373200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr16:47371400-47373200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr16:47371400-47373200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr16:47371400-47373400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
15	chr16:47371600-47372200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr16:47371600-47372200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr16:47371600-47372200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
18	chr16:47371600-47372200	ZNF genes & repeats	Liver	Liver
19	chr16:47371600-47372400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
20	chr16:47371600-47372400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr16:47371600-47372400	ZNF genes & repeats	Left Ventricle	heart
22	chr16:47371600-47372600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr16:47371600-47373200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
24	chr16:47371800-47381000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr16:47371800-47381200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr16:47372000-47372800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr16:47372000-47372800	Weak transcription	Primary B cells from cord blood	blood
28	chr16:47372000-47372800	Weak transcription	Adipose Nuclei	Adipose
29	chr16:47372000-47373400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr16:47372000-47381600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr16:47372000-47397200	Weak transcription	Ovary	ovary
32	chr16:47372000-47397800	Weak transcription	HSMM	muscle
33	chr16:47372000-47403200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr16:47372000-47426200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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