Variant report

Variant	rs28823038
Chromosome Location	chr4:31086538-31086539
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10020646	1.00[AMR][1000 genomes]
rs28432079	1.00[AMR][1000 genomes]
rs28437969	1.00[AMR][1000 genomes]
rs28504467	1.00[AMR][1000 genomes]
rs28520766	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28526007	1.00[AMR][1000 genomes]
rs28589664	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28602887	1.00[AMR][1000 genomes]
rs28613791	1.00[AMR][1000 genomes]
rs28668845	1.00[AMR][1000 genomes]
rs28694628	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28695676	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28710098	1.00[AMR][1000 genomes]
rs6816845	1.00[AMR][1000 genomes]
rs6829654	1.00[AMR][1000 genomes]
rs6850016	0.88[AFR][1000 genomes]
rs9991213	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31066400-31088600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:31070600-31088400	Weak transcription	Fetal Stomach	stomach
3	chr4:31077800-31088600	Weak transcription	Aorta	Aorta
4	chr4:31082000-31087600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:31083400-31086800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:31083400-31088200	Weak transcription	NH-A	brain
7	chr4:31083800-31086800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:31084000-31090000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:31085200-31092600	Enhancers	Fetal Heart	heart
10	chr4:31086000-31086800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:31086000-31087600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:31086400-31087000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:31086400-31087200	Enhancers	Stomach Smooth Muscle	stomach
14	chr4:31086400-31087800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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