Variant report

Variant	rs28602887
Chromosome Location	chr4:31054411-31054412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10020646	1.00[AMR][1000 genomes]
rs28432079	1.00[AMR][1000 genomes]
rs28437969	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28504467	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28520766	1.00[AMR][1000 genomes]
rs28526007	1.00[AMR][1000 genomes]
rs28589664	1.00[AMR][1000 genomes]
rs28613791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28668845	1.00[AMR][1000 genomes]
rs28694628	1.00[AMR][1000 genomes]
rs28695676	1.00[AMR][1000 genomes]
rs28710098	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28823038	1.00[AMR][1000 genomes]
rs6816845	1.00[AMR][1000 genomes]
rs6829654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884819	1.00[AFR][1000 genomes]
rs9991213	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31050200-31057600	Weak transcription	Aorta	Aorta
2	chr4:31052400-31054600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:31053600-31055000	Enhancers	Brain Angular Gyrus	brain
4	chr4:31053800-31055000	Enhancers	Brain Substantia Nigra	brain
5	chr4:31054000-31054800	Enhancers	Brain Hippocampus Middle	brain
6	chr4:31054200-31055000	Weak transcription	Fetal Heart	heart
7	chr4:31054200-31056000	Weak transcription	Fetal Lung	lung
8	chr4:31054400-31056000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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