Variant report

Variant	rs9884819
Chromosome Location	chr4:31054852-31054853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28437969	0.87[AFR][1000 genomes]
rs28504467	0.94[AFR][1000 genomes]
rs28602887	1.00[AFR][1000 genomes]
rs28613791	0.96[AFR][1000 genomes]
rs28710098	0.96[AFR][1000 genomes]
rs6829654	1.00[AFR][1000 genomes]
rs9991213	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31050200-31057600	Weak transcription	Aorta	Aorta
2	chr4:31053600-31055000	Enhancers	Brain Angular Gyrus	brain
3	chr4:31053800-31055000	Enhancers	Brain Substantia Nigra	brain
4	chr4:31054200-31055000	Weak transcription	Fetal Heart	heart
5	chr4:31054200-31056000	Weak transcription	Fetal Lung	lung
6	chr4:31054400-31056000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:31054600-31055000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:31054600-31055000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:31054800-31055000	Bivalent Enhancer	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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