Variant report

Variant	rs28710098
Chromosome Location	chr4:31059100-31059101
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10020646	1.00[AMR][1000 genomes]
rs28432079	1.00[AMR][1000 genomes]
rs28437969	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28504467	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28520766	1.00[AMR][1000 genomes]
rs28526007	1.00[AMR][1000 genomes]
rs28589664	1.00[AMR][1000 genomes]
rs28602887	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28613791	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28668845	1.00[AMR][1000 genomes]
rs28694628	1.00[AMR][1000 genomes]
rs28695676	1.00[AMR][1000 genomes]
rs28823038	1.00[AMR][1000 genomes]
rs6816845	1.00[AMR][1000 genomes]
rs6829654	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884819	0.96[AFR][1000 genomes]
rs9991213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31056000-31060400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:31056800-31066000	Weak transcription	Fetal Heart	heart
3	chr4:31058000-31077200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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