Variant report

Variant	rs2882782
Chromosome Location	chr7:137503393-137503394
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12536204	1.00[AFR][1000 genomes]
rs61757580	1.00[AFR][1000 genomes]
rs73152520	1.00[AFR][1000 genomes]
rs73152521	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137490200-137504600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:137490200-137505200	Weak transcription	NH-A	brain
3	chr7:137490400-137505200	Weak transcription	HSMM	muscle
4	chr7:137494000-137505600	Weak transcription	Aorta	Aorta
5	chr7:137494400-137504400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:137498200-137504400	Weak transcription	Fetal Brain Female	brain
7	chr7:137499400-137504400	Weak transcription	Fetal Brain Male	brain
8	chr7:137501000-137503400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:137501000-137503800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:137501200-137503400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:137501600-137504200	Enhancers	Osteobl	bone
12	chr7:137501800-137503400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:137501800-137503400	Enhancers	HSMMtube	muscle
14	chr7:137501800-137503400	Enhancers	NHDF-Ad	bronchial
15	chr7:137501800-137505000	Weak transcription	Brain Angular Gyrus	brain
16	chr7:137502000-137503800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:137502000-137503800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:137502000-137504400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:137502000-137504600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:137502000-137504600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:137502000-137504800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:137502000-137505000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:137502600-137503400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:137502800-137505200	Weak transcription	GM12878-XiMat	blood
25	chr7:137503000-137503800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr7:137503200-137504400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:137503200-137504600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:137503200-137504600	Weak transcription	Adipose Nuclei	Adipose
29	chr7:137503200-137504600	Weak transcription	NHLF	lung
30	chr7:137503200-137504800	Weak transcription	Fetal Stomach	stomach
31	chr7:137503200-137505000	Weak transcription	Brain Anterior Caudate	brain
32	chr7:137503200-137505400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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