Variant report

Variant	rs61757580
Chromosome Location	chr7:137374693-137374694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12536204	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2882782	1.00[AFR][1000 genomes]
rs73152519	0.83[EUR][1000 genomes]
rs73152520	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73152521	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137369800-137374800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:137370400-137380600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:137370800-137374800	Weak transcription	Brain Germinal Matrix	brain
4	chr7:137370800-137384600	Weak transcription	Fetal Brain Female	brain
5	chr7:137372800-137374800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:137373400-137374800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:137373400-137380800	Weak transcription	NH-A	brain
8	chr7:137373600-137376000	Weak transcription	HSMM	muscle
9	chr7:137373800-137379200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:137374000-137379200	Weak transcription	Osteobl	bone
11	chr7:137374000-137387400	Weak transcription	Aorta	Aorta
12	chr7:137374200-137375800	Genic enhancers	Muscle Satellite Cultured Cells	--
13	chr7:137374400-137378000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:137374400-137380600	Weak transcription	HSMMtube	muscle
15	chr7:137374600-137375800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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