Variant report

Variant	rs28867436
Chromosome Location	chr4:3085477-3085478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:3081667..3084518-chr4:3085377..3088342,3	K562	blood:
2	chr4:3081705..3083285-chr4:3084073..3086877,2	K562	blood:
3	chr4:3080079..3082972-chr4:3083884..3086818,3	MCF-7	breast:
4	chr4:3082361..3085504-chr4:3087676..3091805,3	K562	blood:
5	chr4:3083170..3085782-chr4:3088829..3091721,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10012793	0.91[AFR][1000 genomes]
rs16843804	0.94[ASN][1000 genomes]
rs16843836	0.88[ASN][1000 genomes]
rs17780797	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2024115	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2071655	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2285086	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285087	0.99[ASN][1000 genomes]
rs2298971	0.84[EUR][1000 genomes]
rs28403215	0.91[EUR][1000 genomes]
rs362331	0.83[EUR][1000 genomes]
rs363063	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs363092	0.85[EUR][1000 genomes]
rs363106	0.85[AFR][1000 genomes]
rs3856973	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3905238	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4498089	0.90[ASN][1000 genomes]
rs4690011	0.90[EUR][1000 genomes]
rs4690071	0.99[ASN][1000 genomes]
rs4690072	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4690073	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs55962025	0.89[ASN][1000 genomes]
rs59147561	0.90[AFR][1000 genomes]
rs61348208	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6446722	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6446723	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6828615	0.91[AFR][1000 genomes]
rs6834455	0.91[AFR][1000 genomes]
rs6843895	0.91[AFR][1000 genomes]
rs6844859	0.84[EUR][1000 genomes]
rs73191188	0.92[ASN][1000 genomes]
rs7659144	0.94[ASN][1000 genomes]
rs7665816	0.89[AFR][1000 genomes]
rs7685686	0.81[EUR][1000 genomes]
rs7688390	0.92[AFR][1000 genomes]
rs7691627	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs916171	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv461163	chr4:2906285-3234980	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv593437	chr4:2906285-3234980	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3077400-3093800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:3077800-3089000	Weak transcription	Aorta	Aorta
3	chr4:3077800-3096400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:3078000-3086200	Weak transcription	Placenta	Placenta
5	chr4:3078000-3086800	Weak transcription	Pancreas	Pancrea
6	chr4:3078000-3088000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:3078000-3088400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:3078000-3088600	Weak transcription	Lung	lung
9	chr4:3078000-3088800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:3078000-3088800	Weak transcription	Thymus	Thymus
11	chr4:3078000-3094600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:3078000-3094600	Weak transcription	Esophagus	oesophagus
13	chr4:3078000-3097400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:3078000-3097600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:3078000-3101000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:3078000-3103000	Weak transcription	Colonic Mucosa	Colon
17	chr4:3078200-3089000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:3078200-3089000	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:3078200-3094600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:3078200-3101000	Weak transcription	Brain Substantia Nigra	brain
21	chr4:3078200-3109800	Weak transcription	Stomach Mucosa	stomach
22	chr4:3078400-3086800	Weak transcription	NHEK	skin
23	chr4:3078400-3091600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:3078400-3093200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr4:3078400-3094600	Weak transcription	A549	lung
26	chr4:3078400-3097000	Weak transcription	Brain Anterior Caudate	brain
27	chr4:3078400-3102200	Weak transcription	Hela-S3	cervix
28	chr4:3078400-3107000	Weak transcription	HMEC	breast
29	chr4:3078600-3085800	Enhancers	Primary hematopoietic stem cells	blood
30	chr4:3078600-3086600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:3078600-3088200	Weak transcription	Fetal Stomach	stomach
32	chr4:3078600-3088400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:3078600-3088400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr4:3078600-3088600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:3078600-3088600	Weak transcription	NH-A	brain
36	chr4:3078600-3088600	Weak transcription	Osteobl	bone
37	chr4:3078600-3088800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr4:3078600-3088800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr4:3078600-3088800	Weak transcription	Adipose Nuclei	Adipose
40	chr4:3078600-3088800	Weak transcription	HUVEC	blood vessel
41	chr4:3078600-3089000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:3078600-3089000	Weak transcription	Fetal Lung	lung
43	chr4:3078600-3090200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:3078600-3090200	Weak transcription	HSMM	muscle
45	chr4:3078600-3094200	Weak transcription	Fetal Brain Female	brain
46	chr4:3078600-3094200	Weak transcription	Fetal Muscle Leg	muscle
47	chr4:3078600-3094200	Weak transcription	HSMMtube	muscle
48	chr4:3078600-3094600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr4:3078600-3094600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr4:3078600-3101000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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