Variant report

Variant	rs7659144
Chromosome Location	chr4:3098321-3098322
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:3097049..3099921-chr4:3101807..3103894,2	K562	blood:
2	chr4:3093596..3096340-chr4:3097378..3100304,2	K562	blood:
3	chr4:3074783..3077472-chr4:3096704..3098781,2	K562	blood:
4	chr4:3074783..3077752-chr4:3096120..3098781,2	K562	blood:

Variant related genes	Relation type
ENSG00000197386	Chromatin interaction
ENSG00000251075	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs110501	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs16843804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16843836	0.86[ASN][1000 genomes]
rs17780797	0.84[ASN][1000 genomes]
rs2024115	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2071655	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2285086	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2285087	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28867436	0.94[ASN][1000 genomes]
rs362306	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs362331	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs363064	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs363066	1.00[CHB][hapmap]
rs363096	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs3856973	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4498089	0.86[ASN][1000 genomes]
rs4690071	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4690072	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4690073	1.00[CHB][hapmap]
rs55962025	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61348208	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6446722	0.82[ASN][1000 genomes]
rs6446723	0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs6844859	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6855981	1.00[CHB][hapmap];0.86[YRI][hapmap]
rs73191188	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7685686	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7691627	0.94[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs82333	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs916171	0.81[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv461163	chr4:2906285-3234980	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv593437	chr4:2906285-3234980	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3078000-3101000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:3078000-3103000	Weak transcription	Colonic Mucosa	Colon
3	chr4:3078200-3101000	Weak transcription	Brain Substantia Nigra	brain
4	chr4:3078200-3109800	Weak transcription	Stomach Mucosa	stomach
5	chr4:3078400-3102200	Weak transcription	Hela-S3	cervix
6	chr4:3078400-3107000	Weak transcription	HMEC	breast
7	chr4:3078600-3101000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:3078600-3113800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:3078800-3108800	Weak transcription	Psoas Muscle	Psoas
10	chr4:3079800-3107200	Weak transcription	Fetal Brain Male	brain
11	chr4:3080000-3117800	Weak transcription	Small Intestine	intestine
12	chr4:3081600-3101000	Weak transcription	Spleen	Spleen
13	chr4:3081800-3101600	Weak transcription	Ovary	ovary
14	chr4:3081800-3101600	Weak transcription	Right Ventricle	heart
15	chr4:3084400-3109000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:3084600-3102000	Weak transcription	Gastric	stomach
17	chr4:3084600-3109000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:3085600-3107000	Weak transcription	K562	blood
19	chr4:3087200-3101000	Weak transcription	Pancreas	Pancrea
20	chr4:3087400-3101800	Weak transcription	NHEK	skin
21	chr4:3087800-3108800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr4:3088200-3164200	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr4:3088400-3098800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr4:3089400-3101600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:3089600-3100800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:3090000-3100800	Weak transcription	Brain Hippocampus Middle	brain
27	chr4:3090600-3101200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr4:3090600-3101600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:3091000-3099800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr4:3091000-3100800	Weak transcription	HUVEC	blood vessel
31	chr4:3091000-3101000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:3091000-3101600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:3092400-3101800	Weak transcription	NH-A	brain
34	chr4:3092400-3108200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr4:3092600-3098800	Strong transcription	Fetal Stomach	stomach
36	chr4:3093000-3101600	Weak transcription	NHLF	lung
37	chr4:3093400-3108800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr4:3093600-3109200	Weak transcription	Fetal Heart	heart
39	chr4:3094000-3098800	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr4:3094200-3098800	Strong transcription	Fetal Muscle Leg	muscle
41	chr4:3094400-3123400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr4:3094600-3098600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:3094600-3099000	Strong transcription	Fetal Muscle Trunk	muscle
44	chr4:3094600-3105000	Strong transcription	Primary B cells from cord blood	blood
45	chr4:3094800-3101600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:3095000-3100000	Weak transcription	Brain Angular Gyrus	brain
47	chr4:3095000-3100800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:3095000-3101000	Weak transcription	Fetal Intestine Small	intestine
49	chr4:3095000-3108200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr4:3095200-3100400	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links