Variant report

Variant	rs73191188
Chromosome Location	chr4:3105200-3105201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:3075725..3079021-chr4:3101094..3105877,5	MCF-7	breast:
2	chr4:3098722..3101288-chr4:3104828..3107069,2	K562	blood:
3	chr4:3103289..3106037-chr4:3106708..3108502,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251075	Chromatin interaction
ENSG00000197386	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16843804	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16843836	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17780797	0.87[ASN][1000 genomes]
rs2024115	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2071655	0.87[ASN][1000 genomes]
rs2285086	0.92[ASN][1000 genomes]
rs2285087	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28867436	0.92[ASN][1000 genomes]
rs3856973	0.85[ASN][1000 genomes]
rs4498089	0.84[ASN][1000 genomes]
rs4690071	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4690072	0.86[ASN][1000 genomes]
rs55962025	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58666167	0.82[AFR][1000 genomes]
rs59797128	0.86[AFR][1000 genomes]
rs61348208	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6446722	0.86[ASN][1000 genomes]
rs6446723	0.87[ASN][1000 genomes]
rs6855981	0.87[AFR][1000 genomes]
rs7659144	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7691627	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv461163	chr4:2906285-3234980	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv593437	chr4:2906285-3234980	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3078200-3109800	Weak transcription	Stomach Mucosa	stomach
2	chr4:3078400-3107000	Weak transcription	HMEC	breast
3	chr4:3078600-3113800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:3078800-3108800	Weak transcription	Psoas Muscle	Psoas
5	chr4:3079800-3107200	Weak transcription	Fetal Brain Male	brain
6	chr4:3080000-3117800	Weak transcription	Small Intestine	intestine
7	chr4:3084400-3109000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr4:3084600-3109000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:3085600-3107000	Weak transcription	K562	blood
10	chr4:3087800-3108800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:3088200-3164200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr4:3092400-3108200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:3093400-3108800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:3093600-3109200	Weak transcription	Fetal Heart	heart
15	chr4:3094400-3123400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:3095000-3108200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:3095200-3109000	Weak transcription	A549	lung
18	chr4:3095600-3107200	Weak transcription	HSMMtube	muscle
19	chr4:3096400-3108000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:3097000-3108200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr4:3097200-3143400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:3097200-3162200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr4:3097400-3107400	Strong transcription	GM12878-XiMat	blood
24	chr4:3097400-3107800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr4:3097400-3163800	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr4:3098000-3162600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:3098600-3109800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr4:3099800-3108200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr4:3099800-3108200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr4:3099800-3114400	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr4:3100000-3107800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:3100000-3108000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr4:3100000-3108200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr4:3100000-3110400	Strong transcription	Primary hematopoietic stem cells	blood
35	chr4:3100000-3159400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr4:3100400-3112000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:3100600-3106400	Weak transcription	NHDF-Ad	bronchial
38	chr4:3100600-3108000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:3100600-3108400	Strong transcription	Fetal Muscle Trunk	muscle
40	chr4:3100800-3107800	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:3100800-3108000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr4:3101000-3107800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:3101000-3107800	Strong transcription	Stomach Smooth Muscle	stomach
44	chr4:3101000-3108000	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr4:3101000-3108000	Strong transcription	Duodenum Mucosa	Duodenum
46	chr4:3101000-3108000	Strong transcription	Left Ventricle	heart
47	chr4:3101000-3108200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr4:3101000-3108200	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr4:3101000-3108200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr4:3101000-3108200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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