Variant report

Variant	rs2887654
Chromosome Location	chrX:55291168-55291169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10521478	0.84[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap]
rs1494364	0.93[CHB][hapmap]
rs1494365	0.93[CHB][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap]
rs1845442	0.93[CHB][hapmap]
rs1874110	0.86[CHB][hapmap];0.87[CHD][hapmap]
rs2148982	0.94[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs4295789	0.81[ASW][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.91[TSI][hapmap]
rs5913792	0.93[CHB][hapmap]
rs5914275	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap]
rs5960401	0.93[CHB][hapmap]
rs5960404	0.93[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap]
rs5960405	0.91[CHB][hapmap]
rs6611396	0.93[CHB][hapmap];0.94[CHD][hapmap]
rs6612287	0.94[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs937280	0.93[CHB][hapmap];0.94[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410436	chrX:55229677-55671986	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55290000-55292400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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