Variant report
Variant | rs6612287 |
---|---|
Chromosome Location | chrX:55302839-55302840 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10521478 | 1.00[CHB][hapmap];0.81[JPT][hapmap] |
rs11545211 | 0.85[CHB][hapmap] |
rs12688603 | 0.86[CHB][hapmap] |
rs1494364 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs1494365 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs1845442 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs1874110 | 0.93[CHB][hapmap] |
rs2148982 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2887654 | 0.94[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap] |
rs4295789 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs5913792 | 1.00[CHB][hapmap];0.84[JPT][hapmap] |
rs5914275 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs5960401 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
rs5960404 | 1.00[CHB][hapmap];0.81[JPT][hapmap] |
rs5960405 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs6611396 | 1.00[CHB][hapmap] |
rs937280 | 1.00[CHB][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3410436 | chrX:55229677-55671986 | Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
No data |