Variant report

Variant	rs10521478
Chromosome Location	chrX:55208161-55208162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:60)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:60 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrX:55207962-55208190	Hela-S3	cervix:	n/a	n/a
2	TCF12	chrX:55208000-55208182	GM12878	blood:	n/a	n/a
3	ZBTB33	chrX:55207666-55208198	HepG2	liver:	n/a	n/a
4	FOXP2	chrX:55208007-55208212	PFSK-1	brain:	n/a	n/a
5	RXRA	chrX:55207693-55208748	GM12878	blood:	n/a	n/a
6	SP1	chrX:55207987-55208332	GM12878	blood:	n/a	n/a
7	GATA2	chrX:55207900-55208290	K562	blood:	n/a	n/a
8	IRF4	chrX:55207811-55208375	GM12878	blood:	n/a	n/a
9	HEY1	chrX:55207955-55208195	HepG2	liver:	n/a	n/a
10	PAX5	chrX:55208016-55208167	GM12878	blood:	n/a	n/a
11	BATF	chrX:55208005-55208249	GM12878	blood:	n/a	n/a
12	HEY1	chrX:55207954-55208188	K562	blood:	n/a	n/a
13	EP300	chrX:55207889-55208274	GM12878	blood:	n/a	n/a
14	FOSL2	chrX:55207923-55208222	HepG2	liver:	n/a	chrX:55208175-55208184
15	PAX5	chrX:55207810-55208740	GM12878	blood:	n/a	n/a
16	TAF1	chrX:55207887-55208283	Hela-S3	cervix:	n/a	n/a
17	BCL11A	chrX:55207921-55208297	GM12878	blood:	n/a	n/a
18	POLR2A	chrX:55207817-55208252	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chrX:55208010-55208174	K562	blood:	n/a	n/a
20	RXRA	chrX:55207810-55208666	HepG2	liver:	n/a	n/a
21	ZBTB33	chrX:55207716-55208199	GM12878	blood:	n/a	n/a
22	SPI1	chrX:55207931-55208174	GM12878	blood:	n/a	n/a
23	ZBTB33	chrX:55207705-55208211	GM12878	blood:	n/a	n/a
24	EBF1	chrX:55207897-55208276	GM12878	blood:	n/a	chrX:55208126-55208135
25	PAX5	chrX:55207951-55208250	GM12878	blood:	n/a	n/a
26	BCL11A	chrX:55208011-55208173	GM12878	blood:	n/a	n/a
27	TCF12	chrX:55207928-55208171	GM12878	blood:	n/a	n/a
28	SIX5	chrX:55207958-55208185	K562	blood:	n/a	n/a
29	EBF1	chrX:55207902-55208262	GM12878	blood:	n/a	chrX:55208126-55208135
30	IRF4	chrX:55207811-55208216	GM12878	blood:	n/a	n/a
31	SIN3AK20	chrX:55208012-55208173	HepG2	liver:	n/a	n/a
32	POU2F2	chrX:55208009-55208195	GM12878	blood:	n/a	n/a
33	POLR2A	chrX:55207972-55208212	GM12878	blood:	n/a	n/a
34	POLR2A	chrX:55207954-55208189	PANC-1	pancreas:	n/a	n/a
35	SP1	chrX:55207975-55208387	K562	blood:	n/a	n/a
36	SP1	chrX:55207963-55208197	HepG2	liver:	n/a	n/a
37	CEBPD	chrX:55208006-55208208	K562	blood:	n/a	n/a
38	SPI1	chrX:55208017-55208166	K562	blood:	n/a	n/a
39	SP1	chrX:55207933-55208201	GM12878	blood:	n/a	n/a
40	ZBTB33	chrX:55208001-55208199	K562	blood:	n/a	n/a
41	BATF	chrX:55208003-55208183	GM12878	blood:	n/a	n/a
42	TCF12	chrX:55207991-55208291	HepG2	liver:	n/a	n/a
43	CTCF	chrX:55208015-55208166	K562	blood:	n/a	n/a
44	POLR2A	chrX:55208015-55208169	H1-hESC	embryonic stem cell:	n/a	n/a
45	SIX5	chrX:55207997-55208240	K562	blood:	n/a	n/a
46	JUND	chrX:55208007-55208171	HepG2	liver:	n/a	n/a
47	BHLHE40	chrX:55207991-55208193	HepG2	liver:	n/a	n/a
48	TCF3	chrX:55207961-55208188	GM12878	blood:	n/a	n/a
49	REST	chrX:55207906-55208244	GM12878	blood:	n/a	n/a
50	FOXA1	chrX:55207806-55208206	HepG2	liver:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000229760	TF binding region
MTND1P30	TF binding region
MTND2P24	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12012253	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs1494364	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1494365	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap]
rs1845442	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1874110	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];0.84[MEX][hapmap]
rs1874111	1.00[CEU][hapmap]
rs2148982	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2887654	0.84[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap]
rs4295789	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap]
rs5913792	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs5914275	1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.85[TSI][hapmap]
rs5960060	1.00[ASW][hapmap]
rs5960385	1.00[ASW][hapmap]
rs5960401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960404	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs5960405	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6611396	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[MEX][hapmap]
rs6612287	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs937280	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[MEX][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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