Variant report

Variant	rs28884544
Chromosome Location	chr8:104960539-104960540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10087617	0.84[AFR][1000 genomes]
rs10088414	0.84[AFR][1000 genomes]
rs10088886	0.84[AFR][1000 genomes]
rs10089984	0.84[AFR][1000 genomes]
rs10091132	0.95[AFR][1000 genomes]
rs10093589	0.84[AFR][1000 genomes]
rs10097302	0.84[AFR][1000 genomes]
rs10097620	0.84[AFR][1000 genomes]
rs10104636	0.84[AFR][1000 genomes]
rs10111252	0.84[AFR][1000 genomes]
rs1521064	0.84[AFR][1000 genomes]
rs17816538	0.95[AFR][1000 genomes]
rs1895896	0.84[AFR][1000 genomes]
rs28538941	0.84[AFR][1000 genomes]
rs28569274	0.95[AFR][1000 genomes]
rs28572253	0.95[AFR][1000 genomes]
rs28576535	0.84[AFR][1000 genomes]
rs28667874	0.84[AFR][1000 genomes]
rs28697136	0.84[AFR][1000 genomes]
rs28716856	0.84[AFR][1000 genomes]
rs28782537	0.84[AFR][1000 genomes]
rs28840419	0.84[AFR][1000 genomes]
rs28872263	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv891248	chr8:104956705-105043211	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465753	chr8:104956705-105136549	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv611833	chr8:104956705-105136549	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104948200-104965200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr8:104951800-104964000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:104952000-104977000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:104955600-104969600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:104958400-104960800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:104959400-104961000	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:104959600-104960800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:104959600-104960800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:104959800-104963600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:104960000-104963000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:104960200-104960600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr8:104960400-104962800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:104960400-104975800	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links