Variant report

Variant	rs28569274
Chromosome Location	chr8:104888685-104888686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10087617	0.89[AFR][1000 genomes]
rs10088414	0.89[AFR][1000 genomes]
rs10088886	0.89[AFR][1000 genomes]
rs10089984	0.89[AFR][1000 genomes]
rs10090513	0.89[AFR][1000 genomes]
rs10091132	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10093565	0.89[AFR][1000 genomes]
rs10093589	0.89[AFR][1000 genomes]
rs10095442	0.89[AFR][1000 genomes]
rs10096578	0.89[AFR][1000 genomes]
rs10097302	0.89[AFR][1000 genomes]
rs10097620	0.89[AFR][1000 genomes]
rs10099292	1.00[EUR][1000 genomes]
rs10100425	0.84[AFR][1000 genomes]
rs10104636	0.89[AFR][1000 genomes]
rs10107602	0.89[AFR][1000 genomes]
rs10108442	0.89[AFR][1000 genomes]
rs10111252	0.89[AFR][1000 genomes]
rs10505051	1.00[EUR][1000 genomes]
rs12156137	0.97[EUR][1000 genomes]
rs13438793	0.89[AFR][1000 genomes]
rs13438794	0.89[AFR][1000 genomes]
rs1521064	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16870826	0.97[EUR][1000 genomes]
rs17816538	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1895896	0.89[AFR][1000 genomes]
rs28538941	0.89[AFR][1000 genomes]
rs28572253	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28576535	0.89[AFR][1000 genomes]
rs28667874	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28697136	0.89[AFR][1000 genomes]
rs28716856	0.89[AFR][1000 genomes]
rs28782537	0.89[AFR][1000 genomes]
rs28840419	0.89[AFR][1000 genomes]
rs28872263	0.89[AFR][1000 genomes]
rs28884544	0.95[AFR][1000 genomes]
rs4734741	0.91[EUR][1000 genomes]
rs73697700	1.00[EUR][1000 genomes]
rs73699003	0.97[EUR][1000 genomes]
rs73699004	0.97[EUR][1000 genomes]
rs9656859	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1016387	chr8:104578389-104931853	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	esv1841024	chr8:104872512-104908099	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104859400-104897200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:104887200-104890000	Weak transcription	HMEC	breast
3	chr8:104887200-104891200	Weak transcription	NHEK	skin

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