Variant report

Variant	rs10505051
Chromosome Location	chr8:104904792-104904793
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10090341	0.90[AFR][1000 genomes]
rs10091132	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10092889	0.80[AFR][1000 genomes]
rs10099292	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10102149	0.82[AFR][1000 genomes]
rs10106702	0.96[AFR][1000 genomes]
rs10283176	0.86[AFR][1000 genomes]
rs12156137	0.97[EUR][1000 genomes]
rs12386839	0.90[AFR][1000 genomes]
rs13249634	0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs13273331	0.80[AFR][1000 genomes]
rs13273514	0.80[AFR][1000 genomes]
rs16870665	0.84[AFR][1000 genomes]
rs16870826	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17235384	0.80[AFR][1000 genomes]
rs17235420	0.80[AFR][1000 genomes]
rs17816538	1.00[EUR][1000 genomes]
rs2029934	0.84[AFR][1000 genomes]
rs28515901	0.80[AFR][1000 genomes]
rs28522982	0.84[AFR][1000 genomes]
rs28569274	1.00[EUR][1000 genomes]
rs28572253	1.00[EUR][1000 genomes]
rs28638005	0.80[AFR][1000 genomes]
rs35585808	0.86[AFR][1000 genomes]
rs4734729	0.84[AFR][1000 genomes]
rs4734730	0.82[AFR][1000 genomes]
rs4734731	0.86[AFR][1000 genomes]
rs4734741	0.91[EUR][1000 genomes]
rs55738066	0.81[AFR][1000 genomes]
rs55915215	0.86[AFR][1000 genomes]
rs6468890	0.80[AFR][1000 genomes]
rs6987298	0.80[AFR][1000 genomes]
rs6989899	0.90[AFR][1000 genomes]
rs7003269	0.80[AFR][1000 genomes]
rs7004346	0.80[YRI][hapmap]
rs73697698	0.81[AFR][1000 genomes]
rs73697700	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699003	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73699004	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7813212	0.86[AFR][1000 genomes]
rs7832329	0.86[AFR][1000 genomes]
rs7832358	0.86[AFR][1000 genomes]
rs7842231	0.80[AFR][1000 genomes]
rs7845768	0.82[AFR][1000 genomes]
rs9650008	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1016387	chr8:104578389-104931853	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	esv1841024	chr8:104872512-104908099	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104897200-104914200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:104898200-104919000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:104899400-104933400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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