Variant report

Variant	rs12386839
Chromosome Location	chr8:104831994-104831995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 204 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs10086828	0.82[AFR][1000 genomes]
rs10090039	0.84[AFR][1000 genomes]
rs10090341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10091089	0.84[AFR][1000 genomes]
rs10091859	0.82[AFR][1000 genomes]
rs10092889	0.90[AFR][1000 genomes]
rs10096287	0.88[AFR][1000 genomes]
rs10097302	0.89[EUR][1000 genomes]
rs10099292	0.85[AFR][1000 genomes]
rs10100599	0.84[AFR][1000 genomes]
rs10101232	0.87[AFR][1000 genomes]
rs10101275	0.84[AFR][1000 genomes]
rs10102149	0.92[AFR][1000 genomes]
rs10103024	0.82[AFR][1000 genomes]
rs10103086	0.82[AFR][1000 genomes]
rs10105191	0.82[AFR][1000 genomes]
rs10105760	0.89[AFR][1000 genomes]
rs10106702	0.86[AFR][1000 genomes]
rs10108212	0.84[AFR][1000 genomes]
rs10110162	0.84[AFR][1000 genomes]
rs10110452	0.86[AFR][1000 genomes]
rs10112260	0.86[AFR][1000 genomes]
rs10113157	0.84[AFR][1000 genomes]
rs10283176	0.96[AFR][1000 genomes]
rs10453069	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10505051	0.90[AFR][1000 genomes]
rs11775418	0.88[AFR][1000 genomes]
rs11776671	0.86[AFR][1000 genomes]
rs11776707	0.82[AFR][1000 genomes]
rs11778502	0.84[AFR][1000 genomes]
rs11779043	0.86[AFR][1000 genomes]
rs11784812	0.80[AFR][1000 genomes]
rs11787180	0.82[AFR][1000 genomes]
rs12156411	0.88[EUR][1000 genomes]
rs12334431	0.82[AFR][1000 genomes]
rs12334852	0.86[AFR][1000 genomes]
rs12334941	0.82[AFR][1000 genomes]
rs12335100	0.85[AFR][1000 genomes]
rs12335106	0.82[AFR][1000 genomes]
rs12335323	0.84[AFR][1000 genomes]
rs12681238	0.85[EUR][1000 genomes]
rs12681640	0.88[EUR][1000 genomes]
rs12707788	0.82[AFR][1000 genomes]
rs12707789	0.84[AFR][1000 genomes]
rs12707790	0.84[AFR][1000 genomes]
rs12707793	0.86[AFR][1000 genomes]
rs12707794	0.86[AFR][1000 genomes]
rs13249502	0.82[AFR][1000 genomes]
rs13249634	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs13257824	0.84[AFR][1000 genomes]
rs13259857	0.84[AFR][1000 genomes]
rs13260896	0.80[AFR][1000 genomes]
rs13262003	0.84[AFR][1000 genomes]
rs13262669	0.84[AFR][1000 genomes]
rs13263306	0.82[AFR][1000 genomes]
rs13273331	0.90[AFR][1000 genomes]
rs13273514	0.90[AFR][1000 genomes]
rs13276150	0.82[AFR][1000 genomes]
rs13439565	0.89[AFR][1000 genomes]
rs13439652	0.82[AFR][1000 genomes]
rs13439734	0.82[AFR][1000 genomes]
rs1426296	0.84[AFR][1000 genomes]
rs1521058	0.84[AFR][1000 genomes]
rs1521064	0.97[EUR][1000 genomes]
rs1593491	0.84[AFR][1000 genomes]
rs1593492	0.84[AFR][1000 genomes]
rs1593493	0.84[AFR][1000 genomes]
rs1593500	0.84[AFR][1000 genomes]
rs16870614	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs16870616	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs16870641	0.86[AFR][1000 genomes]
rs16870665	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16870826	0.88[CEU][hapmap];1.00[MEX][hapmap]
rs17234011	0.88[EUR][1000 genomes]
rs17234389	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17234965	0.88[EUR][1000 genomes]
rs17234986	0.88[EUR][1000 genomes]
rs17235384	0.90[AFR][1000 genomes]
rs17235420	0.90[AFR][1000 genomes]
rs17807832	0.88[EUR][1000 genomes]
rs17807953	0.88[EUR][1000 genomes]
rs17808942	0.88[AFR][1000 genomes]
rs1895896	0.89[EUR][1000 genomes]
rs1895898	0.88[EUR][1000 genomes]
rs2080608	0.84[AFR][1000 genomes]
rs2111491	0.82[AFR][1000 genomes]
rs2114249	0.88[EUR][1000 genomes]
rs2160713	0.82[AFR][1000 genomes]
rs2388725	0.88[EUR][1000 genomes]
rs2388781	0.84[AFR][1000 genomes]
rs28420723	0.82[AFR][1000 genomes]
rs28478652	0.88[AFR][1000 genomes]
rs28515901	0.90[AFR][1000 genomes]
rs28517319	0.84[AFR][1000 genomes]
rs28522982	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28638005	0.90[AFR][1000 genomes]
rs28667874	1.00[EUR][1000 genomes]
rs28693917	0.81[AFR][1000 genomes]
rs28772965	0.82[AFR][1000 genomes]
rs28796041	0.88[AFR][1000 genomes]
rs28846684	0.84[AFR][1000 genomes]
rs28857239	0.84[AFR][1000 genomes]
rs34353892	0.82[AFR][1000 genomes]
rs34955447	0.82[AFR][1000 genomes]
rs34995326	0.82[AFR][1000 genomes]
rs35287474	0.86[AFR][1000 genomes]
rs35294891	0.82[AFR][1000 genomes]
rs35381068	0.84[AFR][1000 genomes]
rs35585808	0.96[AFR][1000 genomes]
rs35732252	0.82[AFR][1000 genomes]
rs35880303	0.86[AFR][1000 genomes]
rs4472479	0.88[EUR][1000 genomes]
rs4734080	0.91[EUR][1000 genomes]
rs4734728	0.88[AFR][1000 genomes]
rs4734729	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4734730	0.92[AFR][1000 genomes]
rs4734731	0.96[AFR][1000 genomes]
rs4734734	1.00[EUR][1000 genomes]
rs55731986	0.84[AFR][1000 genomes]
rs55915215	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56345763	0.82[AFR][1000 genomes]
rs56378194	0.86[AFR][1000 genomes]
rs56999386	0.82[AFR][1000 genomes]
rs58594820	0.82[AFR][1000 genomes]
rs6468885	0.86[AFR][1000 genomes]
rs6468886	0.86[AFR][1000 genomes]
rs6468889	0.88[AFR][1000 genomes]
rs6468890	0.90[AFR][1000 genomes]
rs66604513	0.86[AFR][1000 genomes]
rs66631289	0.86[AFR][1000 genomes]
rs66906001	0.86[AFR][1000 genomes]
rs66956359	0.84[AFR][1000 genomes]
rs67220620	0.86[AFR][1000 genomes]
rs67607591	0.86[AFR][1000 genomes]
rs6982513	0.86[AFR][1000 genomes]
rs6982815	0.86[AFR][1000 genomes]
rs6985107	0.88[AFR][1000 genomes]
rs6985351	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6985447	0.84[AFR][1000 genomes]
rs6986283	1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6986976	0.84[AFR][1000 genomes]
rs6987298	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6989899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6991695	0.84[AFR][1000 genomes]
rs6992080	0.88[AFR][1000 genomes]
rs6992377	0.82[AFR][1000 genomes]
rs6993208	0.84[AFR][1000 genomes]
rs6993536	0.81[AFR][1000 genomes]
rs6993909	0.84[AFR][1000 genomes]
rs7002230	0.86[AFR][1000 genomes]
rs7003269	0.90[AFR][1000 genomes]
rs7004346	0.82[YRI][hapmap]
rs7005828	0.82[AFR][1000 genomes]
rs7012874	0.82[AFR][1000 genomes]
rs7014784	0.84[AFR][1000 genomes]
rs7014799	0.84[AFR][1000 genomes]
rs7014867	0.84[AFR][1000 genomes]
rs7015973	0.82[AFR][1000 genomes]
rs7016776	0.88[AFR][1000 genomes]
rs7016802	0.84[AFR][1000 genomes]
rs7016905	0.82[AFR][1000 genomes]
rs7017726	0.88[AFR][1000 genomes]
rs71512488	0.80[AFR][1000 genomes]
rs73696700	0.86[AFR][1000 genomes]
rs73697612	0.86[AFR][1000 genomes]
rs73697673	0.83[AFR][1000 genomes]
rs73697684	0.83[AFR][1000 genomes]
rs73697688	0.83[AFR][1000 genomes]
rs73697700	0.87[AFR][1000 genomes]
rs769134	0.88[EUR][1000 genomes]
rs7813212	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7818497	0.82[AFR][1000 genomes]
rs7818836	0.85[AFR][1000 genomes]
rs7822017	0.84[AFR][1000 genomes]
rs7824485	0.85[AFR][1000 genomes]
rs7825696	0.84[AFR][1000 genomes]
rs7832329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7832358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7834353	0.84[AFR][1000 genomes]
rs7835266	0.82[AFR][1000 genomes]
rs7835783	0.86[AFR][1000 genomes]
rs7838295	0.84[AFR][1000 genomes]
rs7840564	0.82[AFR][1000 genomes]
rs7842231	0.90[AFR][1000 genomes]
rs7843709	0.84[AFR][1000 genomes]
rs7843860	0.83[AFR][1000 genomes]
rs7843928	0.84[AFR][1000 genomes]
rs7844638	0.88[AFR][1000 genomes]
rs7844822	0.88[AFR][1000 genomes]
rs7845768	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9297336	0.82[AFR][1000 genomes]
rs9297338	0.82[AFR][1000 genomes]
rs9650008	0.90[AFR][1000 genomes]
rs9656788	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1023048	chr8:104355188-104872701	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv539705	chr8:104355188-104872701	ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv1021345	chr8:104361854-104879684	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1032085	chr8:104362187-104878345	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1016387	chr8:104578389-104931853	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104805800-104858600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:104830600-104835800	Active TSS	Brain Angular Gyrus	brain
3	chr8:104831000-104833800	Active TSS	Brain Anterior Caudate	brain
4	chr8:104831200-104834000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:104831200-104835400	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr8:104831400-104833600	Active TSS	Fetal Brain Female	brain
7	chr8:104831600-104832600	Active TSS	Brain Hippocampus Middle	brain
8	chr8:104831800-104839400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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