Variant report

Variant	rs73697684
Chromosome Location	chr8:104839378-104839379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10090341	0.83[AFR][1000 genomes]
rs12114257	1.00[AMR][1000 genomes]
rs12115119	1.00[AMR][1000 genomes]
rs12386839	0.83[AFR][1000 genomes]
rs13263630	0.82[AFR][1000 genomes]
rs55738066	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56773931	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58032159	1.00[AMR][1000 genomes]
rs60299412	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60412815	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60552383	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61042766	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61589769	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6989899	0.83[AFR][1000 genomes]
rs6990477	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6993163	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7004346	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7006816	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7017687	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7018117	0.95[AFR][1000 genomes]
rs73696666	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696667	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697653	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697657	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697662	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697668	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697683	1.00[AMR][1000 genomes]
rs73697688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697690	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697694	1.00[AMR][1000 genomes]
rs73697695	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697696	1.00[AMR][1000 genomes]
rs73697698	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7824892	1.00[AMR][1000 genomes]
rs7826206	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7841801	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9918740	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1023048	chr8:104355188-104872701	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv539705	chr8:104355188-104872701	ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv1021345	chr8:104361854-104879684	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1032085	chr8:104362187-104878345	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1016387	chr8:104578389-104931853	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104805800-104858600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:104831800-104839400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:104838400-104843600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links