Variant report
Variant | rs73697688 |
---|---|
Chromosome Location | chr8:104879065-104879066 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10090341 | 0.83[AFR][1000 genomes] |
rs12114257 | 1.00[AMR][1000 genomes] |
rs12115119 | 1.00[AMR][1000 genomes] |
rs12386839 | 0.83[AFR][1000 genomes] |
rs13263630 | 0.82[AFR][1000 genomes] |
rs55738066 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs56773931 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58032159 | 1.00[AMR][1000 genomes] |
rs60299412 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60412815 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60552383 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61042766 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61589769 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6989899 | 0.83[AFR][1000 genomes] |
rs6990477 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6993163 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7004346 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7006816 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7017687 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7018117 | 0.95[AFR][1000 genomes] |
rs73697653 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73697657 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73697662 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73697668 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73697673 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73697683 | 1.00[AMR][1000 genomes] |
rs73697684 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73697690 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73697694 | 1.00[AMR][1000 genomes] |
rs73697695 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73697696 | 1.00[AMR][1000 genomes] |
rs73697698 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7826206 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7841801 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9918740 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1020476 | chr8:104312212-104924482 | Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
2 | nsv539704 | chr8:104312212-104924482 | Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
3 | nsv1021345 | chr8:104361854-104879684 | Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
4 | esv2752692 | chr8:104520824-105123824 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
5 | nsv1016387 | chr8:104578389-104931853 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv1031195 | chr8:104601231-105194208 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
7 | esv1841024 | chr8:104872512-104908099 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:104859400-104897200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |