Variant report

Variant	rs28522982
Chromosome Location	chr8:104821771-104821772
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104814198..104817108-chr8:104820828..104822548,2	K562	blood:

Extended variants
information (count: 210 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:200)

rs_ID	r²[population]
rs10086828	0.84[AFR][1000 genomes]
rs10090039	0.86[AFR][1000 genomes]
rs10090341	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10091089	0.86[AFR][1000 genomes]
rs10091859	0.84[AFR][1000 genomes]
rs10092889	0.92[AFR][1000 genomes]
rs10096287	0.90[AFR][1000 genomes]
rs10096428	0.82[AFR][1000 genomes]
rs10097302	0.92[EUR][1000 genomes]
rs10100599	0.86[AFR][1000 genomes]
rs10101232	0.89[AFR][1000 genomes]
rs10101275	0.86[AFR][1000 genomes]
rs10102149	0.94[AFR][1000 genomes]
rs10103024	0.84[AFR][1000 genomes]
rs10103086	0.84[AFR][1000 genomes]
rs10105191	0.84[AFR][1000 genomes]
rs10105760	0.91[AFR][1000 genomes]
rs10106702	0.80[AFR][1000 genomes]
rs10108212	0.86[AFR][1000 genomes]
rs10110162	0.86[AFR][1000 genomes]
rs10110452	0.88[AFR][1000 genomes]
rs10112260	0.88[AFR][1000 genomes]
rs10113157	0.86[AFR][1000 genomes]
rs10283176	0.90[AFR][1000 genomes]
rs10453069	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10505051	0.84[AFR][1000 genomes]
rs11775418	0.90[AFR][1000 genomes]
rs11776671	0.88[AFR][1000 genomes]
rs11776707	0.84[AFR][1000 genomes]
rs11778502	0.86[AFR][1000 genomes]
rs11779043	0.88[AFR][1000 genomes]
rs11784812	0.82[AFR][1000 genomes]
rs11787180	0.84[AFR][1000 genomes]
rs12156411	0.91[EUR][1000 genomes]
rs12334431	0.84[AFR][1000 genomes]
rs12334852	0.88[AFR][1000 genomes]
rs12334941	0.84[AFR][1000 genomes]
rs12335100	0.87[AFR][1000 genomes]
rs12335106	0.84[AFR][1000 genomes]
rs12335323	0.86[AFR][1000 genomes]
rs12386839	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12681238	0.88[EUR][1000 genomes]
rs12681517	0.81[EUR][1000 genomes]
rs12681640	0.91[EUR][1000 genomes]
rs12707788	0.84[AFR][1000 genomes]
rs12707789	0.86[AFR][1000 genomes]
rs12707790	0.86[AFR][1000 genomes]
rs12707793	0.88[AFR][1000 genomes]
rs12707794	0.88[AFR][1000 genomes]
rs13249502	0.84[AFR][1000 genomes]
rs13249634	0.92[AFR][1000 genomes]
rs13257824	0.86[AFR][1000 genomes]
rs13259857	0.86[AFR][1000 genomes]
rs13260896	0.82[AFR][1000 genomes]
rs13262003	0.86[AFR][1000 genomes]
rs13262669	0.86[AFR][1000 genomes]
rs13263306	0.84[AFR][1000 genomes]
rs13273331	0.92[AFR][1000 genomes]
rs13273514	0.92[AFR][1000 genomes]
rs13276150	0.84[AFR][1000 genomes]
rs13279952	0.81[AFR][1000 genomes]
rs13439565	0.91[AFR][1000 genomes]
rs13439652	0.84[AFR][1000 genomes]
rs13439734	0.84[AFR][1000 genomes]
rs1426296	0.86[AFR][1000 genomes]
rs1521058	0.86[AFR][1000 genomes]
rs1521064	1.00[EUR][1000 genomes]
rs1593491	0.86[AFR][1000 genomes]
rs1593492	0.86[AFR][1000 genomes]
rs1593493	0.86[AFR][1000 genomes]
rs1593500	0.86[AFR][1000 genomes]
rs16870614	0.84[AFR][1000 genomes]
rs16870616	0.84[AFR][1000 genomes]
rs16870641	0.88[AFR][1000 genomes]
rs16870665	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17233499	0.88[EUR][1000 genomes]
rs17234011	0.91[EUR][1000 genomes]
rs17234389	0.84[AFR][1000 genomes]
rs17234965	0.91[EUR][1000 genomes]
rs17234986	0.91[EUR][1000 genomes]
rs17235384	0.92[AFR][1000 genomes]
rs17235420	0.92[AFR][1000 genomes]
rs17807832	0.91[EUR][1000 genomes]
rs17807953	0.91[EUR][1000 genomes]
rs17808942	0.90[AFR][1000 genomes]
rs1895896	0.92[EUR][1000 genomes]
rs1895898	0.91[EUR][1000 genomes]
rs2080608	0.86[AFR][1000 genomes]
rs2111491	0.84[AFR][1000 genomes]
rs2114249	0.91[EUR][1000 genomes]
rs2160713	0.84[AFR][1000 genomes]
rs2388725	0.91[EUR][1000 genomes]
rs2388781	0.86[AFR][1000 genomes]
rs28420723	0.84[AFR][1000 genomes]
rs28422794	0.80[AFR][1000 genomes]
rs28478652	0.90[AFR][1000 genomes]
rs28515901	0.92[AFR][1000 genomes]
rs28517319	0.86[AFR][1000 genomes]
rs28638005	0.92[AFR][1000 genomes]
rs28667874	0.97[EUR][1000 genomes]
rs28674864	0.81[AFR][1000 genomes]
rs28693917	0.83[AFR][1000 genomes]
rs28772965	0.84[AFR][1000 genomes]
rs28796041	0.90[AFR][1000 genomes]
rs28799635	0.82[AFR][1000 genomes]
rs28846684	0.86[AFR][1000 genomes]
rs28857239	0.86[AFR][1000 genomes]
rs34353892	0.84[AFR][1000 genomes]
rs34955447	0.84[AFR][1000 genomes]
rs34995326	0.84[AFR][1000 genomes]
rs35287474	0.88[AFR][1000 genomes]
rs35294891	0.84[AFR][1000 genomes]
rs35381068	0.86[AFR][1000 genomes]
rs35585808	0.90[AFR][1000 genomes]
rs35732252	0.84[AFR][1000 genomes]
rs35880303	0.88[AFR][1000 genomes]
rs4472479	0.91[EUR][1000 genomes]
rs4734080	0.94[EUR][1000 genomes]
rs4734728	0.90[AFR][1000 genomes]
rs4734729	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4734730	0.94[AFR][1000 genomes]
rs4734731	0.90[AFR][1000 genomes]
rs4734734	0.97[EUR][1000 genomes]
rs55731986	0.86[AFR][1000 genomes]
rs55915215	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56345763	0.84[AFR][1000 genomes]
rs56378194	0.88[AFR][1000 genomes]
rs56999386	0.84[AFR][1000 genomes]
rs58594820	0.84[AFR][1000 genomes]
rs61589769	0.80[AFR][1000 genomes]
rs6468885	0.88[AFR][1000 genomes]
rs6468886	0.88[AFR][1000 genomes]
rs6468889	0.90[AFR][1000 genomes]
rs6468890	0.92[AFR][1000 genomes]
rs66604513	0.88[AFR][1000 genomes]
rs66631289	0.88[AFR][1000 genomes]
rs66906001	0.88[AFR][1000 genomes]
rs66956359	0.86[AFR][1000 genomes]
rs67220620	0.88[AFR][1000 genomes]
rs67607591	0.88[AFR][1000 genomes]
rs6982513	0.88[AFR][1000 genomes]
rs6982815	0.88[AFR][1000 genomes]
rs6985107	0.90[AFR][1000 genomes]
rs6985351	0.84[AFR][1000 genomes]
rs6985447	0.86[AFR][1000 genomes]
rs6986283	0.83[AFR][1000 genomes]
rs6986976	0.86[AFR][1000 genomes]
rs6987298	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6989899	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6991695	0.86[AFR][1000 genomes]
rs6992080	0.90[AFR][1000 genomes]
rs6992377	0.84[AFR][1000 genomes]
rs6993208	0.86[AFR][1000 genomes]
rs6993536	0.83[AFR][1000 genomes]
rs6993909	0.86[AFR][1000 genomes]
rs7002230	0.88[AFR][1000 genomes]
rs7003269	0.92[AFR][1000 genomes]
rs7005828	0.84[AFR][1000 genomes]
rs7012874	0.84[AFR][1000 genomes]
rs7014784	0.86[AFR][1000 genomes]
rs7014799	0.86[AFR][1000 genomes]
rs7014867	0.86[AFR][1000 genomes]
rs7015973	0.84[AFR][1000 genomes]
rs7016776	0.90[AFR][1000 genomes]
rs7016802	0.86[AFR][1000 genomes]
rs7016905	0.84[AFR][1000 genomes]
rs7017726	0.90[AFR][1000 genomes]
rs7018187	0.80[AFR][1000 genomes]
rs71512488	0.82[AFR][1000 genomes]
rs73696700	0.88[AFR][1000 genomes]
rs73697612	0.88[AFR][1000 genomes]
rs73697662	0.80[AFR][1000 genomes]
rs73697668	0.80[AFR][1000 genomes]
rs73697700	0.81[AFR][1000 genomes]
rs769134	0.91[EUR][1000 genomes]
rs7813212	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7818497	0.84[AFR][1000 genomes]
rs7818836	0.87[AFR][1000 genomes]
rs7822017	0.86[AFR][1000 genomes]
rs7824485	0.87[AFR][1000 genomes]
rs7825696	0.86[AFR][1000 genomes]
rs7832329	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7832358	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7834353	0.86[AFR][1000 genomes]
rs7835266	0.84[AFR][1000 genomes]
rs7835783	0.88[AFR][1000 genomes]
rs7838295	0.86[AFR][1000 genomes]
rs7840564	0.84[AFR][1000 genomes]
rs7842231	0.92[AFR][1000 genomes]
rs7843709	0.86[AFR][1000 genomes]
rs7843860	0.85[AFR][1000 genomes]
rs7843928	0.86[AFR][1000 genomes]
rs7844638	0.90[AFR][1000 genomes]
rs7844822	0.90[AFR][1000 genomes]
rs7845768	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9297336	0.84[AFR][1000 genomes]
rs9297338	0.84[AFR][1000 genomes]
rs9650008	0.92[AFR][1000 genomes]
rs9656788	0.88[AFR][1000 genomes]
rs9918740	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1023048	chr8:104355188-104872701	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv539705	chr8:104355188-104872701	ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv1021345	chr8:104361854-104879684	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1032085	chr8:104362187-104878345	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1016387	chr8:104578389-104931853	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104805800-104858600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:104812400-104831200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:104821600-104822000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr8:104821600-104822200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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