Variant report

Variant	rs10106702
Chromosome Location	chr8:104903417-104903418
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 290 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:284)

rs_ID	r²[population]
rs10090039	1.00[ASN][1000 genomes]
rs10090341	0.86[AFR][1000 genomes]
rs10091089	1.00[ASN][1000 genomes]
rs10096287	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10099292	0.91[AFR][1000 genomes]
rs10100599	1.00[ASN][1000 genomes]
rs10101232	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10101275	1.00[ASN][1000 genomes]
rs10102149	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10105760	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10108212	1.00[ASN][1000 genomes]
rs10110162	1.00[ASN][1000 genomes]
rs10112260	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10113157	1.00[ASN][1000 genomes]
rs10283176	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505048	1.00[ASN][1000 genomes]
rs10505049	1.00[ASN][1000 genomes]
rs10505050	1.00[ASN][1000 genomes]
rs10505051	0.96[AFR][1000 genomes]
rs10505053	1.00[ASN][1000 genomes]
rs11773987	1.00[ASN][1000 genomes]
rs11774671	1.00[ASN][1000 genomes]
rs11774950	1.00[ASN][1000 genomes]
rs11775418	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11776671	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11777910	1.00[ASN][1000 genomes]
rs11778485	1.00[ASN][1000 genomes]
rs11778502	1.00[ASN][1000 genomes]
rs11779039	1.00[ASN][1000 genomes]
rs11779043	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11779045	1.00[ASN][1000 genomes]
rs11779406	1.00[ASN][1000 genomes]
rs11780689	1.00[ASN][1000 genomes]
rs11781707	1.00[ASN][1000 genomes]
rs11782394	1.00[ASN][1000 genomes]
rs11782470	1.00[ASN][1000 genomes]
rs11783512	1.00[ASN][1000 genomes]
rs11783737	1.00[ASN][1000 genomes]
rs11783738	1.00[ASN][1000 genomes]
rs11783859	1.00[ASN][1000 genomes]
rs11784228	1.00[ASN][1000 genomes]
rs11787103	1.00[ASN][1000 genomes]
rs12335106	1.00[ASN][1000 genomes]
rs12335323	1.00[ASN][1000 genomes]
rs12386839	0.86[AFR][1000 genomes]
rs12707789	1.00[ASN][1000 genomes]
rs12707790	1.00[ASN][1000 genomes]
rs12707793	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12707794	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13249634	0.87[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13250371	1.00[ASN][1000 genomes]
rs13251836	1.00[ASN][1000 genomes]
rs13252533	1.00[ASN][1000 genomes]
rs13254156	1.00[ASN][1000 genomes]
rs13255680	1.00[ASN][1000 genomes]
rs13255888	1.00[ASN][1000 genomes]
rs13256235	1.00[ASN][1000 genomes]
rs13257824	1.00[ASN][1000 genomes]
rs13258465	1.00[ASN][1000 genomes]
rs13259857	1.00[ASN][1000 genomes]
rs13262003	1.00[ASN][1000 genomes]
rs13262669	1.00[ASN][1000 genomes]
rs13263630	1.00[ASN][1000 genomes]
rs13265448	1.00[ASN][1000 genomes]
rs13269655	1.00[ASN][1000 genomes]
rs13273331	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13273514	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13275465	1.00[ASN][1000 genomes]
rs13275964	1.00[ASN][1000 genomes]
rs13280499	1.00[ASN][1000 genomes]
rs13281460	1.00[ASN][1000 genomes]
rs13439565	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1426294	1.00[ASN][1000 genomes]
rs1426296	1.00[ASN][1000 genomes]
rs1521063	1.00[ASN][1000 genomes]
rs1593491	1.00[ASN][1000 genomes]
rs1593492	1.00[ASN][1000 genomes]
rs1593493	1.00[ASN][1000 genomes]
rs1593500	1.00[ASN][1000 genomes]
rs16870641	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16870665	0.80[AFR][1000 genomes]
rs16870822	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17235384	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17235420	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17237727	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17238125	1.00[ASN][1000 genomes]
rs17239100	1.00[ASN][1000 genomes]
rs17808942	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17810092	1.00[ASN][1000 genomes]
rs17817023	1.00[ASN][1000 genomes]
rs17817071	1.00[ASN][1000 genomes]
rs17817125	1.00[ASN][1000 genomes]
rs17817381	1.00[ASN][1000 genomes]
rs17817675	1.00[ASN][1000 genomes]
rs17817711	1.00[ASN][1000 genomes]
rs17817783	1.00[ASN][1000 genomes]
rs17817861	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2003	1.00[ASN][1000 genomes]
rs2080608	1.00[ASN][1000 genomes]
rs2132643	1.00[ASN][1000 genomes]
rs2173080	1.00[ASN][1000 genomes]
rs2388781	1.00[ASN][1000 genomes]
rs28425195	1.00[ASN][1000 genomes]
rs28478652	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28517319	1.00[ASN][1000 genomes]
rs28522982	0.80[AFR][1000 genomes]
rs28638005	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28674864	1.00[ASN][1000 genomes]
rs28693917	1.00[ASN][1000 genomes]
rs28772965	1.00[ASN][1000 genomes]
rs28794838	1.00[ASN][1000 genomes]
rs28846684	1.00[ASN][1000 genomes]
rs28857239	1.00[ASN][1000 genomes]
rs2935295	1.00[CHB][hapmap]
rs2935297	1.00[ASN][1000 genomes]
rs2935298	1.00[ASN][1000 genomes]
rs34273302	1.00[ASN][1000 genomes]
rs34322085	1.00[ASN][1000 genomes]
rs34450887	1.00[ASN][1000 genomes]
rs34503807	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34647894	1.00[ASN][1000 genomes]
rs35078015	1.00[ASN][1000 genomes]
rs35104198	1.00[ASN][1000 genomes]
rs35287474	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35312860	1.00[ASN][1000 genomes]
rs35370013	1.00[ASN][1000 genomes]
rs35381068	1.00[ASN][1000 genomes]
rs35391571	1.00[ASN][1000 genomes]
rs35438751	1.00[ASN][1000 genomes]
rs35585808	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35880303	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35888047	1.00[ASN][1000 genomes]
rs36000561	1.00[ASN][1000 genomes]
rs41414649	1.00[ASN][1000 genomes]
rs4734728	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4734729	0.80[AFR][1000 genomes]
rs4734730	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4734731	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55662672	1.00[ASN][1000 genomes]
rs55682817	1.00[ASN][1000 genomes]
rs55685114	1.00[ASN][1000 genomes]
rs55726655	1.00[ASN][1000 genomes]
rs55731986	1.00[ASN][1000 genomes]
rs55738203	1.00[ASN][1000 genomes]
rs55746407	1.00[ASN][1000 genomes]
rs55807810	1.00[ASN][1000 genomes]
rs55831990	1.00[ASN][1000 genomes]
rs55840106	1.00[ASN][1000 genomes]
rs55892562	1.00[ASN][1000 genomes]
rs55915215	0.82[AFR][1000 genomes]
rs55918633	1.00[ASN][1000 genomes]
rs55927269	1.00[ASN][1000 genomes]
rs55933208	1.00[ASN][1000 genomes]
rs55947402	1.00[ASN][1000 genomes]
rs56238414	1.00[ASN][1000 genomes]
rs56239440	1.00[ASN][1000 genomes]
rs56275097	1.00[ASN][1000 genomes]
rs56309866	1.00[ASN][1000 genomes]
rs56317008	1.00[ASN][1000 genomes]
rs56386117	1.00[ASN][1000 genomes]
rs56394923	1.00[ASN][1000 genomes]
rs56409041	1.00[ASN][1000 genomes]
rs61280722	1.00[ASN][1000 genomes]
rs6468885	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6468886	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6468889	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6468890	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66604513	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66631289	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66906001	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66956359	1.00[ASN][1000 genomes]
rs67220620	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67432617	1.00[ASN][1000 genomes]
rs67607591	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67732651	1.00[ASN][1000 genomes]
rs68142003	1.00[ASN][1000 genomes]
rs6981288	1.00[ASN][1000 genomes]
rs6982513	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6982815	0.80[AFR][1000 genomes]
rs6985107	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6985447	1.00[ASN][1000 genomes]
rs6985492	1.00[ASN][1000 genomes]
rs6989899	0.86[AFR][1000 genomes]
rs6991695	1.00[ASN][1000 genomes]
rs6992080	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6993208	1.00[ASN][1000 genomes]
rs6993536	1.00[ASN][1000 genomes]
rs6993909	1.00[ASN][1000 genomes]
rs6998869	1.00[ASN][1000 genomes]
rs6998963	1.00[ASN][1000 genomes]
rs7002230	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7003269	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7005828	1.00[ASN][1000 genomes]
rs7014784	1.00[ASN][1000 genomes]
rs7014799	1.00[ASN][1000 genomes]
rs7014867	1.00[ASN][1000 genomes]
rs7016724	1.00[ASN][1000 genomes]
rs7016776	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7016802	1.00[ASN][1000 genomes]
rs7016905	1.00[ASN][1000 genomes]
rs7017726	0.82[AFR][1000 genomes]
rs72679487	1.00[ASN][1000 genomes]
rs72679490	1.00[ASN][1000 genomes]
rs72679498	1.00[ASN][1000 genomes]
rs72679499	1.00[ASN][1000 genomes]
rs72681308	1.00[ASN][1000 genomes]
rs72681322	1.00[ASN][1000 genomes]
rs72681351	1.00[ASN][1000 genomes]
rs72681354	1.00[ASN][1000 genomes]
rs72681355	1.00[ASN][1000 genomes]
rs72681356	1.00[ASN][1000 genomes]
rs72681362	1.00[ASN][1000 genomes]
rs72681364	1.00[ASN][1000 genomes]
rs72681365	1.00[ASN][1000 genomes]
rs72681366	1.00[ASN][1000 genomes]
rs72681368	1.00[ASN][1000 genomes]
rs72681372	1.00[ASN][1000 genomes]
rs72681373	1.00[ASN][1000 genomes]
rs72681375	1.00[ASN][1000 genomes]
rs72681376	1.00[ASN][1000 genomes]
rs72681377	1.00[ASN][1000 genomes]
rs72681379	1.00[ASN][1000 genomes]
rs72681380	1.00[ASN][1000 genomes]
rs72681383	1.00[ASN][1000 genomes]
rs72681388	1.00[ASN][1000 genomes]
rs72681389	1.00[ASN][1000 genomes]
rs72681390	1.00[ASN][1000 genomes]
rs72681392	1.00[ASN][1000 genomes]
rs72681393	1.00[ASN][1000 genomes]
rs72681394	1.00[ASN][1000 genomes]
rs72681395	1.00[ASN][1000 genomes]
rs72681397	1.00[ASN][1000 genomes]
rs72681398	1.00[ASN][1000 genomes]
rs72681402	1.00[ASN][1000 genomes]
rs72683104	1.00[ASN][1000 genomes]
rs72683106	1.00[ASN][1000 genomes]
rs72683107	1.00[ASN][1000 genomes]
rs72683108	1.00[ASN][1000 genomes]
rs72683109	1.00[ASN][1000 genomes]
rs72683110	1.00[ASN][1000 genomes]
rs72683111	1.00[ASN][1000 genomes]
rs72683112	1.00[ASN][1000 genomes]
rs72683114	1.00[ASN][1000 genomes]
rs72683115	1.00[ASN][1000 genomes]
rs72683116	1.00[ASN][1000 genomes]
rs72683117	1.00[ASN][1000 genomes]
rs72683118	1.00[ASN][1000 genomes]
rs72683119	1.00[ASN][1000 genomes]
rs72683120	1.00[ASN][1000 genomes]
rs72683121	1.00[ASN][1000 genomes]
rs72683122	1.00[ASN][1000 genomes]
rs72683123	1.00[ASN][1000 genomes]
rs72683124	1.00[ASN][1000 genomes]
rs72683125	1.00[ASN][1000 genomes]
rs72683126	1.00[ASN][1000 genomes]
rs72683127	1.00[ASN][1000 genomes]
rs72683128	1.00[ASN][1000 genomes]
rs72683130	1.00[ASN][1000 genomes]
rs72683133	1.00[ASN][1000 genomes]
rs72683134	1.00[ASN][1000 genomes]
rs72683135	1.00[ASN][1000 genomes]
rs73697700	0.93[AFR][1000 genomes]
rs7813212	0.82[AFR][1000 genomes]
rs7818836	1.00[ASN][1000 genomes]
rs7821195	1.00[ASN][1000 genomes]
rs7822106	1.00[ASN][1000 genomes]
rs7824485	1.00[ASN][1000 genomes]
rs7825696	1.00[ASN][1000 genomes]
rs7832329	0.82[AFR][1000 genomes]
rs7832358	0.82[AFR][1000 genomes]
rs7832993	1.00[ASN][1000 genomes]
rs7834353	1.00[ASN][1000 genomes]
rs7835783	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7836764	1.00[ASN][1000 genomes]
rs7836827	1.00[ASN][1000 genomes]
rs7838295	1.00[ASN][1000 genomes]
rs7839328	1.00[ASN][1000 genomes]
rs7843709	1.00[ASN][1000 genomes]
rs7843860	1.00[ASN][1000 genomes]
rs7843928	1.00[ASN][1000 genomes]
rs7844638	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7844822	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9650008	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9656788	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1016387	chr8:104578389-104931853	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	esv1841024	chr8:104872512-104908099	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104897200-104914200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:104898200-104919000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:104899400-104933400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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