Variant report
| Variant | rs28898325 |
|---|---|
| Chromosome Location | chr4:125742748-125742749 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125741503..125743157-chr4:125746025..125748000,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10032712 | 0.95[ASN][1000 genomes] |
| rs10518444 | 0.95[ASN][1000 genomes] |
| rs2077965 | 0.88[ASN][1000 genomes] |
| rs2271081 | 0.91[ASN][1000 genomes] |
| rs28446665 | 0.89[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs28460081 | 0.87[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs28504361 | 0.95[ASN][1000 genomes] |
| rs28885213 | 0.89[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs62323263 | 0.91[ASN][1000 genomes] |
| rs62323264 | 0.88[ASN][1000 genomes] |
| rs62323265 | 0.81[ASN][1000 genomes] |
| rs62323266 | 0.81[ASN][1000 genomes] |
| rs6828645 | 0.92[ASN][1000 genomes] |
| rs72916652 | 0.95[ASN][1000 genomes] |
| rs7663118 | 0.86[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7689467 | 0.91[ASN][1000 genomes] |
| rs9307549 | 0.86[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9998185 | 0.89[AFR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879883 | chr4:125732734-125767985 | Enhancers ZNF genes & repeats Strong transcription Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125724600-125759600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
