Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10032712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10518444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1605274	1.00[EUR][1000 genomes]
rs17008645	1.00[EUR][1000 genomes]
rs2077965	0.95[ASN][1000 genomes]
rs2271081	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28446665	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28460081	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28504361	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28885213	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28898325	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs62323263	0.98[ASN][1000 genomes]
rs62323264	0.95[ASN][1000 genomes]
rs62323265	0.88[ASN][1000 genomes]
rs62323266	0.88[ASN][1000 genomes]
rs6828645	0.86[ASN][1000 genomes]
rs72916652	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7689467	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9307549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998185	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879883	chr4:125732734-125767985	Enhancers ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125724600-125759600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125755200-125763000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:125755600-125760800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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