Variant report
| Variant | rs62323266 |
|---|---|
| Chromosome Location | chr4:125772688-125772689 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125766671..125769138-chr4:125772617..125775217,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10032712 | 0.83[ASN][1000 genomes] |
| rs10518444 | 0.83[ASN][1000 genomes] |
| rs11736122 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs2077965 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs28446665 | 0.83[ASN][1000 genomes] |
| rs28460081 | 0.83[ASN][1000 genomes] |
| rs28504361 | 0.85[ASN][1000 genomes] |
| rs28885213 | 0.88[ASN][1000 genomes] |
| rs28898325 | 0.81[ASN][1000 genomes] |
| rs62323263 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62323264 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs62323265 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72916652 | 0.85[ASN][1000 genomes] |
| rs7663118 | 0.88[ASN][1000 genomes] |
| rs7689467 | 0.90[ASN][1000 genomes] |
| rs9307549 | 0.88[ASN][1000 genomes] |
| rs9998185 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125768000-125773000 | Weak transcription | Placenta Amnion | Placenta Amnion |
