Variant report

Variant	rs28917225
Chromosome Location	chr5:151121520-151121521
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151120987..151123964-chr5:151149229..151151918,3	K562	blood:
2	chr5:151120108..151124287-chr5:151137525..151139418,3	MCF-7	breast:
3	chr5:151118929..151121871-chr5:151122174..151125024,4	K562	blood:
4	chr5:151119267..151125823-chr5:151135086..151139341,8	K562	blood:
5	chr5:151036685..151039208-chr5:151120344..151122587,2	K562	blood:
6	chr5:151115125..151118299-chr5:151118871..151121711,3	K562	blood:

Variant related genes	Relation type
ENSG00000177556	Chromatin interaction
ENSG00000145907	Chromatin interaction

rs_ID	r²[population]
rs28917222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57637894	1.00[AMR][1000 genomes]
rs6579911	1.00[AMR][1000 genomes]
rs6891463	1.00[AMR][1000 genomes]
rs7712774	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7731695	1.00[AMR][1000 genomes]
rs7734998	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151098000-151124800	Weak transcription	Aorta	Aorta
2	chr5:151101800-151124800	Weak transcription	Gastric	stomach
3	chr5:151108000-151122600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:151108600-151122800	Weak transcription	Thymus	Thymus
5	chr5:151110800-151122200	Weak transcription	Dnd41	blood
6	chr5:151110800-151122400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:151112400-151125000	Weak transcription	Esophagus	oesophagus
8	chr5:151116200-151121600	Weak transcription	Liver	Liver
9	chr5:151116800-151122200	Weak transcription	Spleen	Spleen
10	chr5:151117200-151122200	Weak transcription	HepG2	liver
11	chr5:151117800-151122200	Weak transcription	Primary B cells from cord blood	blood
12	chr5:151117800-151122400	Enhancers	HUVEC	blood vessel
13	chr5:151118000-151121800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr5:151118400-151123000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:151119000-151122000	Enhancers	Placenta	Placenta
16	chr5:151119000-151122200	Enhancers	HMEC	breast
17	chr5:151119600-151121800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr5:151119600-151121800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:151119800-151122000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:151120000-151124600	Weak transcription	Lung	lung
21	chr5:151120000-151137600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr5:151120200-151121800	Weak transcription	Brain Germinal Matrix	brain
23	chr5:151120200-151122200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:151120200-151122800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:151120200-151123600	Weak transcription	Colonic Mucosa	Colon
26	chr5:151120200-151124600	Weak transcription	Left Ventricle	heart
27	chr5:151120200-151124600	Weak transcription	Right Ventricle	heart
28	chr5:151120200-151137000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:151120200-151137200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr5:151120400-151122000	Weak transcription	Fetal Brain Female	brain
31	chr5:151120400-151122200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr5:151120400-151124400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr5:151120400-151124600	Weak transcription	Fetal Brain Male	brain
34	chr5:151120600-151121600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr5:151120600-151122200	Enhancers	Adipose Nuclei	Adipose
36	chr5:151120600-151122200	Weak transcription	Fetal Kidney	kidney
37	chr5:151120600-151122200	Weak transcription	Fetal Lung	lung
38	chr5:151120600-151122200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr5:151120600-151122200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr5:151120600-151122400	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr5:151120600-151122400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr5:151120600-151122600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr5:151120600-151122600	Weak transcription	Brain Anterior Caudate	brain
44	chr5:151120600-151122600	Weak transcription	Fetal Intestine Large	intestine
45	chr5:151120600-151122800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr5:151120600-151123600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr5:151120600-151123800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr5:151120600-151124000	Weak transcription	K562	blood
49	chr5:151120600-151125000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr5:151120600-151132400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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