Variant report

Variant	rs28947191
Chromosome Location	chr2:113672271-113672272
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1143624	1.00[AMR][1000 genomes]
rs1143638	1.00[AMR][1000 genomes]
rs34801108	1.00[AMR][1000 genomes]
rs35734363	1.00[AMR][1000 genomes]
rs35893082	1.00[AMR][1000 genomes]
rs3783561	1.00[AMR][1000 genomes]
rs3917350	1.00[AMR][1000 genomes]
rs3917353	1.00[AMR][1000 genomes]
rs56978795	1.00[AMR][1000 genomes]
rs57460702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59890835	1.00[AMR][1000 genomes]
rs60771282	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003372	chr2:113670890-113682621	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113664800-113678000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:113671600-113674400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:113671600-113674800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr2:113671600-113683000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:113671800-113674600	Enhancers	Fetal Thymus	thymus
6	chr2:113671800-113675000	Enhancers	Thymus	Thymus
7	chr2:113672000-113674200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr2:113672000-113674600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr2:113672200-113672400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:113672200-113674200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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