Variant report

Variant	rs59890835
Chromosome Location	chr2:113555936-113555937
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113554686..113556687-chr2:113559770..113562228,2	K562	blood:
2	chr2:113554700..113558289-chr2:113562996..113565231,3	K562	blood:
3	chr2:113554665..113556955-chr2:113568287..113571042,2	K562	blood:
4	chr2:113555926..113558593-chr2:113563370..113565916,2	K562	blood:
5	chr2:113554827..113556612-chr2:113559813..113562263,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1143624	1.00[AMR][1000 genomes]
rs1143638	1.00[AMR][1000 genomes]
rs28947191	1.00[AMR][1000 genomes]
rs3783561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3917350	1.00[AMR][1000 genomes]
rs3917353	1.00[AMR][1000 genomes]
rs56978795	1.00[AMR][1000 genomes]
rs57460702	1.00[AMR][1000 genomes]
rs60771282	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010106	chr2:113394981-113556071	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113542400-113559200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:113543000-113562200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:113552800-113560800	Weak transcription	Osteobl	bone
4	chr2:113553600-113559000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:113553600-113559000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:113553600-113561200	Weak transcription	K562	blood
7	chr2:113553600-113562800	Weak transcription	Esophagus	oesophagus
8	chr2:113553800-113556200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr2:113553800-113556200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:113553800-113556600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:113553800-113556600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr2:113553800-113557400	Weak transcription	Placenta	Placenta
13	chr2:113553800-113558400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr2:113553800-113559200	Weak transcription	Hela-S3	cervix
15	chr2:113553800-113563000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:113554400-113556000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr2:113554400-113556200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:113554400-113557000	Weak transcription	HMEC	breast
19	chr2:113554400-113558800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:113554600-113557000	Weak transcription	NHEK	skin
21	chr2:113555600-113563200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:113555800-113557800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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