The 2.0 version of rSNPBase

Variant report

Variant rs3917353
Chromosome Location chr2:113592947-113592948
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:113587600-113593800 Transcr. at gene 5' and 3' Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr2:113588000-113593600 Transcr. at gene 5' and 3' Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr2:113589000-113593600 Transcr. at gene 5' and 3' Monocytes-CD14+_RO01746 blood
4 chr2:113589000-113594000 Transcr. at gene 5' and 3' Primary neutrophils fromperipheralblood blood
5 chr2:113589600-113594800 Weak transcription Esophagus oesophagus
6 chr2:113590000-113593400 Weak transcription Fetal Muscle Leg muscle
7 chr2:113590000-113594000 Transcr. at gene 5' and 3' NHEK skin
8 chr2:113590200-113593400 Weak transcription Primary B cells from peripheral blood blood
9 chr2:113590400-113593600 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr2:113590400-113595200 Enhancers Fetal Intestine Small intestine
11 chr2:113590600-113593000 Weak transcription GM12878-XiMat blood
12 chr2:113590600-113596000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr2:113591200-113593200 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr2:113591200-113593200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr2:113591200-113593200 Enhancers Hela-S3 cervix
16 chr2:113591200-113593400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr2:113591200-113595000 Enhancers Fetal Intestine Large intestine
18 chr2:113591200-113600200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr2:113591600-113593000 Enhancers Duodenum Mucosa Duodenum
20 chr2:113591600-113593200 Transcr. at gene 5' and 3' HMEC breast
21 chr2:113591600-113593600 Active TSS Primary B cells from cord blood blood
22 chr2:113591600-113595000 Enhancers Adipose Nuclei Adipose
23 chr2:113591800-113593800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr2:113591800-113594000 Enhancers Stomach Mucosa stomach
25 chr2:113591800-113595000 Enhancers Skeletal Muscle Female skeletal muscle
26 chr2:113592000-113593400 Enhancers Osteobl bone
27 chr2:113592200-113593000 Enhancers Rectal Mucosa Donor 29 rectum
28 chr2:113592200-113593200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
29 chr2:113592200-113594000 Enhancers Pancreas Pancrea
30 chr2:113592200-113594400 Flanking Active TSS Primary monocytes fromperipheralblood blood
31 chr2:113592200-113595000 Enhancers Sigmoid Colon Sigmoid Colon
32 chr2:113592400-113593200 Transcr. at gene 5' and 3' Primary hematopoietic stem cells short term culture blood
33 chr2:113592400-113593400 Weak transcription Small Intestine intestine
34 chr2:113592400-113593400 Enhancers HepG2 liver
35 chr2:113592400-113593600 Enhancers Colonic Mucosa Colon
36 chr2:113592400-113593800 Weak transcription iPS-20b Cell Line embryonic stem cell
37 chr2:113592400-113594000 Weak transcription NH-A brain
38 chr2:113592400-113594200 Weak transcription HUVEC blood vessel
39 chr2:113592600-113593400 Transcr. at gene 5' and 3' Primary hematopoietic stem cells blood
40 chr2:113592600-113594200 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr2:113592800-113593200 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr2:113592800-113594200 Active TSS Brain Hippocampus Middle brain
43 chr2:113592800-113594200 Enhancers Spleen Spleen
44 chr2:113592800-113594400 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
45 chr2:113592800-113594400 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr2:113592800-113597200 Weak transcription Liver Liver

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Last update: Aug 31, 2015