Variant report
Variant | rs2895422 |
---|---|
Chromosome Location | chr2:209755059-209755060 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs10451578 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10451581 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs13428553 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs13431649 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs2364690 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2364691 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2364692 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs2364694 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2399518 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2886147 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs35888428 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs3851938 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv875757 | chr2:209659222-209755059 | Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv875758 | chr2:209676037-209784089 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv875759 | chr2:209692190-209784089 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv460058 | chr2:209755059-209866395 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | nsv584306 | chr2:209755059-209866395 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:209754000-209756800 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |