Variant report

Variant	rs3851938
Chromosome Location	chr2:209757450-209757451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10451578	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10451581	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13428553	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13431649	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2364690	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2364691	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2364692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2364694	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2399518	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2886147	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2895422	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs35888428	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875758	chr2:209676037-209784089	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv875759	chr2:209692190-209784089	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv460058	chr2:209755059-209866395	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv584306	chr2:209755059-209866395	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1012184	chr2:209755847-210049331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536131	chr2:209755847-210049331	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209756400-209757600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:209756800-209757600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:209756800-209757600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:209757200-209758200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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