Variant report

Variant	rs28961313
Chromosome Location	chr2:51922076-51922077
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10201408	0.83[ASN][1000 genomes]
rs1028146	0.82[ASN][1000 genomes]
rs11125373	0.81[ASN][1000 genomes]
rs11562944	0.83[ASN][1000 genomes]
rs11562969	0.85[ASN][1000 genomes]
rs11563021	0.85[ASN][1000 genomes]
rs11563088	0.93[ASN][1000 genomes]
rs11563089	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11563117	0.93[ASN][1000 genomes]
rs11563267	0.97[ASN][1000 genomes]
rs11884304	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11891933	0.83[ASN][1000 genomes]
rs11896915	0.85[ASN][1000 genomes]
rs12104790	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12105215	0.93[ASN][1000 genomes]
rs12475198	1.00[CHB][hapmap]
rs1516184	0.86[ASN][1000 genomes]
rs1516186	0.83[ASN][1000 genomes]
rs2354387	1.00[CHB][hapmap]
rs2354388	1.00[CHB][hapmap]
rs2354389	1.00[CHB][hapmap]
rs28949269	0.80[ASN][1000 genomes]
rs28960993	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28961316	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28961321	0.96[ASN][1000 genomes]
rs28961322	0.95[ASN][1000 genomes]
rs28961332	0.86[ASN][1000 genomes]
rs28961340	0.87[ASN][1000 genomes]
rs28961346	0.87[ASN][1000 genomes]
rs28961578	0.85[ASN][1000 genomes]
rs28961580	0.85[ASN][1000 genomes]
rs28961587	0.85[ASN][1000 genomes]
rs28961626	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28962184	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28965475	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs28967868	0.85[ASN][1000 genomes]
rs28967880	0.83[ASN][1000 genomes]
rs4108601	0.85[ASN][1000 genomes]
rs72888302	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001552	chr2:51225970-52139741	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv535708	chr2:51225970-52139741	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv874069	chr2:51723107-52006583	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1011738	chr2:51731251-51976068	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv581887	chr2:51883456-51927714	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv874072	chr2:51883456-51928042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1009513	chr2:51890060-52821980	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv581888	chr2:51900836-51927714	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv874073	chr2:51906097-51928042	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv874074	chr2:51906097-51930030	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv581889	chr2:51909753-51927714	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv874075	chr2:51909753-51930030	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv581890	chr2:51911579-51927731	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1828785	chr2:51914309-51927714	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1795689	chr2:51914354-51927714	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1795730	chr2:51914354-51927714	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv581891	chr2:51914354-51927714	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv581892	chr2:51914354-51927731	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv581893	chr2:51914354-51928042	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv874076	chr2:51914354-51930030	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv516396	chr2:51914354-51934748	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv874077	chr2:51914354-51934748	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv581894	chr2:51916795-51927731	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv1008696	chr2:51920617-51949532	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	esv1791754	chr2:51920657-51927695	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv1796147	chr2:51920657-51927695	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv1796294	chr2:51920657-51927695	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv581895	chr2:51920859-51927714	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv581896	chr2:51920859-51927731	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv511161	chr2:51921531-51928042	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:51921200-51922400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:51921800-51922400	Enhancers	Osteobl	bone
3	chr2:51922000-51922200	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links