Variant report

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10201408	0.87[ASN][1000 genomes]
rs11125373	0.87[ASN][1000 genomes]
rs11562944	0.90[ASN][1000 genomes]
rs11562969	1.00[ASN][1000 genomes]
rs11563021	1.00[ASN][1000 genomes]
rs11563089	0.82[ASN][1000 genomes]
rs11563117	0.86[ASN][1000 genomes]
rs11563267	0.82[ASN][1000 genomes]
rs11884304	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11891933	0.90[ASN][1000 genomes]
rs11896915	0.88[ASN][1000 genomes]
rs12104790	0.85[ASN][1000 genomes]
rs12105215	0.83[ASN][1000 genomes]
rs12464410	0.86[EUR][1000 genomes]
rs12470943	1.00[CEU][hapmap]
rs12472024	1.00[CEU][hapmap]
rs12475198	0.90[CHB][hapmap]
rs1516184	0.90[ASN][1000 genomes]
rs1516186	0.87[ASN][1000 genomes]
rs17862740	0.81[EUR][1000 genomes]
rs17863664	0.81[EUR][1000 genomes]
rs2354387	0.90[CHB][hapmap]
rs2354388	0.90[CHB][hapmap]
rs2354389	0.90[CHB][hapmap]
rs28949269	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28949885	0.81[EUR][1000 genomes]
rs28958600	0.80[ASN][1000 genomes]
rs28960993	0.86[ASN][1000 genomes]
rs28961313	0.85[ASN][1000 genomes]
rs28961316	0.82[ASN][1000 genomes]
rs28961321	0.81[ASN][1000 genomes]
rs28961332	0.90[ASN][1000 genomes]
rs28961340	0.91[ASN][1000 genomes]
rs28961346	0.91[ASN][1000 genomes]
rs28961578	1.00[ASN][1000 genomes]
rs28961580	1.00[ASN][1000 genomes]
rs28961587	1.00[ASN][1000 genomes]
rs28961626	0.96[ASN][1000 genomes]
rs28962184	0.82[ASN][1000 genomes]
rs28965475	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs28967868	0.88[ASN][1000 genomes]
rs28967880	0.90[ASN][1000 genomes]
rs72888302	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001552	chr2:51225970-52139741	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv535708	chr2:51225970-52139741	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv874069	chr2:51723107-52006583	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1011738	chr2:51731251-51976068	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:51875600-51876200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:51875600-51876200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:51875600-51876400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:51875600-51876600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:51875800-51876200	Enhancers	HUES6 Cell Line	embryonic stem cell

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