Variant report
| Variant | rs28961587 |
|---|---|
| Chromosome Location | chr2:51863331-51863332 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10201408 | 0.87[ASN][1000 genomes] |
| rs11125373 | 0.87[ASN][1000 genomes] |
| rs11562944 | 0.90[ASN][1000 genomes] |
| rs11562969 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11563021 | 0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11563089 | 0.82[ASN][1000 genomes] |
| rs11563117 | 0.86[ASN][1000 genomes] |
| rs11563267 | 0.82[ASN][1000 genomes] |
| rs11884304 | 0.88[ASN][1000 genomes] |
| rs11891933 | 0.90[ASN][1000 genomes] |
| rs11896915 | 0.88[ASN][1000 genomes] |
| rs12104790 | 0.85[ASN][1000 genomes] |
| rs12105215 | 0.83[ASN][1000 genomes] |
| rs1516175 | 0.81[AFR][1000 genomes] |
| rs1516184 | 0.90[ASN][1000 genomes] |
| rs1516186 | 0.87[ASN][1000 genomes] |
| rs28949269 | 0.93[ASN][1000 genomes] |
| rs28958600 | 0.80[ASN][1000 genomes] |
| rs28960993 | 0.86[ASN][1000 genomes] |
| rs28961313 | 0.85[ASN][1000 genomes] |
| rs28961316 | 0.82[ASN][1000 genomes] |
| rs28961321 | 0.81[ASN][1000 genomes] |
| rs28961332 | 0.90[ASN][1000 genomes] |
| rs28961340 | 0.91[ASN][1000 genomes] |
| rs28961346 | 0.91[ASN][1000 genomes] |
| rs28961578 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28961580 | 1.00[ASN][1000 genomes] |
| rs28961626 | 0.96[ASN][1000 genomes] |
| rs28962184 | 0.82[ASN][1000 genomes] |
| rs28965475 | 0.88[ASN][1000 genomes] |
| rs28967868 | 0.88[ASN][1000 genomes] |
| rs28967880 | 0.90[ASN][1000 genomes] |
| rs4108601 | 1.00[ASN][1000 genomes] |
| rs72888302 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001552 | chr2:51225970-52139741 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv535708 | chr2:51225970-52139741 | Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv874069 | chr2:51723107-52006583 | Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1011738 | chr2:51731251-51976068 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:51863200-51863800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
