Variant report

Variant	rs2896704
Chromosome Location	chr11:24546735-24546736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11027963	0.96[ASN][1000 genomes]
rs11027965	0.96[ASN][1000 genomes]
rs11027966	0.96[ASN][1000 genomes]
rs11027967	0.96[ASN][1000 genomes]
rs11027968	0.96[ASN][1000 genomes]
rs11027969	0.96[ASN][1000 genomes]
rs12270014	1.00[ASN][1000 genomes]
rs12292047	0.96[ASN][1000 genomes]
rs12798501	0.96[ASN][1000 genomes]
rs1318297	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16912642	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16912643	0.84[EUR][1000 genomes]
rs16912665	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16912670	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16912674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073195	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57056516	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59912639	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59946308	0.84[EUR][1000 genomes]
rs61690067	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108220	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7108369	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7112207	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7112415	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7112434	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73429132	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73429133	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73429136	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73429143	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952535	0.84[EUR][1000 genomes]
rs883926	1.00[ASN][1000 genomes]
rs906884	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906885	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897090	chr11:24539980-24576745	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv897091	chr11:24543475-24576745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24546600-24547600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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