Variant report

Variant	rs11027963
Chromosome Location	chr11:24535835-24535836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:24534222..24536357-chr11:24537627..24539546,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11027965	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11027966	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11027967	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11027968	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11027969	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270014	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12292047	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12798501	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1318297	0.92[ASN][1000 genomes]
rs16912665	0.96[ASN][1000 genomes]
rs16912670	0.96[ASN][1000 genomes]
rs16912674	0.96[ASN][1000 genomes]
rs2896704	0.96[ASN][1000 genomes]
rs4073195	0.96[ASN][1000 genomes]
rs57056516	0.96[ASN][1000 genomes]
rs59912639	0.96[ASN][1000 genomes]
rs61690067	0.96[ASN][1000 genomes]
rs7108220	0.96[ASN][1000 genomes]
rs7108369	1.00[ASN][1000 genomes]
rs7112207	1.00[ASN][1000 genomes]
rs7112415	1.00[ASN][1000 genomes]
rs7112434	1.00[ASN][1000 genomes]
rs73429132	1.00[ASN][1000 genomes]
rs73429133	1.00[ASN][1000 genomes]
rs73429136	1.00[ASN][1000 genomes]
rs73429143	0.96[ASN][1000 genomes]
rs883926	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs906884	0.96[ASN][1000 genomes]
rs906885	0.96[ASN][1000 genomes]
rs906886	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897088	chr11:24419481-24543475	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv553794	chr11:24435202-24537624	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv897089	chr11:24477706-24545353	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv553819	chr11:24499370-24545353	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv469945	chr11:24515523-24545353	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1794831	chr11:24529770-24537683	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24533800-24536400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:24534400-24536400	Weak transcription	Fetal Intestine Large	intestine
3	chr11:24535000-24536000	Enhancers	Fetal Brain Female	brain
4	chr11:24535200-24536000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:24535200-24536000	Enhancers	Fetal Brain Male	brain
6	chr11:24535200-24536600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:24535200-24536600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:24535200-24537000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:24535200-24537000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:24535200-24537200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr11:24535400-24536200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:24535600-24536000	Flanking Active TSS	Fetal Heart	heart
13	chr11:24535600-24536200	Enhancers	Fetal Kidney	kidney
14	chr11:24535600-24536400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr11:24535600-24536600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:24535800-24536200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr11:24535800-24536200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:24535800-24536200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:24535800-24536600	Enhancers	H1 Cell Line	embryonic stem cell

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