Variant report

Variant	rs906886
Chromosome Location	chr11:24539401-24539402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:24534222..24536357-chr11:24537627..24539546,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11027963	0.96[ASN][1000 genomes]
rs11027965	0.96[ASN][1000 genomes]
rs11027966	0.96[ASN][1000 genomes]
rs11027967	0.96[ASN][1000 genomes]
rs11027968	0.96[ASN][1000 genomes]
rs11027969	0.96[ASN][1000 genomes]
rs12270014	1.00[ASN][1000 genomes]
rs12292047	0.96[ASN][1000 genomes]
rs12798501	0.96[ASN][1000 genomes]
rs1318297	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16912642	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16912643	0.84[EUR][1000 genomes]
rs16912665	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16912670	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16912674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2896704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073195	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57056516	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59912639	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59946308	0.84[EUR][1000 genomes]
rs61690067	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108220	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7108369	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7112207	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7112415	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7112434	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73429132	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73429133	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73429136	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73429143	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952535	0.84[EUR][1000 genomes]
rs883926	1.00[ASN][1000 genomes]
rs906884	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906885	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897088	chr11:24419481-24543475	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv897089	chr11:24477706-24545353	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv553819	chr11:24499370-24545353	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv469945	chr11:24515523-24545353	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24536800-24539800	Weak transcription	Fetal Heart	heart
2	chr11:24537000-24540000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:24538600-24543000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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