Variant report

Variant	rs2897290
Chromosome Location	chr8:35314837-35314838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:35309662..35311958-chr8:35313825..35315981,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10086433	0.83[EUR][1000 genomes]
rs10097983	0.94[ASN][1000 genomes]
rs10954985	0.82[EUR][1000 genomes]
rs10954986	0.83[EUR][1000 genomes]
rs11984853	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11987881	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11991965	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11992772	0.82[EUR][1000 genomes]
rs11996793	0.82[EUR][1000 genomes]
rs12056409	0.83[EUR][1000 genomes]
rs12542495	0.82[EUR][1000 genomes]
rs12550658	0.82[EUR][1000 genomes]
rs12680114	0.81[EUR][1000 genomes]
rs13266519	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1528704	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1528708	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1528709	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1528717	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1528718	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1528719	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1528720	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1528721	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1534584	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16883904	0.84[EUR][1000 genomes]
rs1980396	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2010451	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2405735	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28388271	0.83[EUR][1000 genomes]
rs28395502	0.81[EUR][1000 genomes]
rs28412900	0.81[EUR][1000 genomes]
rs2897245	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35365523	0.82[EUR][1000 genomes]
rs35985268	0.83[EUR][1000 genomes]
rs4360290	0.83[EUR][1000 genomes]
rs4452796	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4739304	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4739408	0.94[ASN][1000 genomes]
rs58886150	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6992809	0.82[EUR][1000 genomes]
rs7815545	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7819547	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7824542	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7828218	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7829585	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs871994	0.81[EUR][1000 genomes]
rs9297237	0.89[EUR][1000 genomes]
rs951515	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv890717	chr8:35184361-35315188	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1024397	chr8:35296922-35424277	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35295400-35317000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:35311800-35315600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:35312600-35316600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:35314200-35316600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:35314400-35315800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:35314400-35316600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:35314600-35315600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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