Variant report

Variant	rs7824542
Chromosome Location	chr8:35272054-35272055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10086433	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10091291	0.84[EUR][1000 genomes]
rs10101937	0.84[EUR][1000 genomes]
rs10104660	0.85[EUR][1000 genomes]
rs10954985	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10954986	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11984839	0.87[EUR][1000 genomes]
rs11984853	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11987881	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11991431	0.84[EUR][1000 genomes]
rs11991965	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11992772	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11996793	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12056409	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12542495	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12550658	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12679477	0.99[ASN][1000 genomes]
rs12680114	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13266519	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1528704	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1528708	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1528709	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1528717	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1528718	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1528719	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1528720	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1528721	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1528722	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1534584	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16883904	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1919344	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1919348	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1950042	0.81[EUR][1000 genomes]
rs1980396	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2010451	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2405735	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28388271	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28395502	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28412900	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2897245	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2897290	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35365523	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35985268	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4360290	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4452796	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4540403	0.84[EUR][1000 genomes]
rs4739304	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4739399	0.80[EUR][1000 genomes]
rs4739400	0.84[EUR][1000 genomes]
rs4739406	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4739407	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4739408	0.83[ASN][1000 genomes]
rs58886150	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6992809	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7815545	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7819547	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7824855	0.87[EUR][1000 genomes]
rs7828218	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7829585	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs871994	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9297236	0.84[EUR][1000 genomes]
rs9297237	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs951515	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv890717	chr8:35184361-35315188	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35269000-35273400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:35269400-35276000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:35269400-35276000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:35269800-35274800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr8:35270400-35273800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:35270600-35272400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:35270600-35274800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:35270600-35278600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:35270800-35276200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:35271200-35276600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:35271400-35272600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:35271400-35275400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:35271600-35272600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr8:35271800-35274800	Weak transcription	Fetal Heart	heart
15	chr8:35272000-35276800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links