Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10097983	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11984853	0.83[ASN][1000 genomes]
rs11987881	0.83[ASN][1000 genomes]
rs12679477	0.83[ASN][1000 genomes]
rs13280010	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13282746	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1528720	0.83[ASN][1000 genomes]
rs1528721	0.83[ASN][1000 genomes]
rs1528722	0.83[ASN][1000 genomes]
rs1919344	0.83[ASN][1000 genomes]
rs1919348	0.83[ASN][1000 genomes]
rs2010451	0.85[ASN][1000 genomes]
rs2897245	0.81[ASN][1000 genomes]
rs2897290	0.94[ASN][1000 genomes]
rs2980391	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4739406	0.83[ASN][1000 genomes]
rs4739407	0.84[ASN][1000 genomes]
rs7006157	0.80[EUR][1000 genomes]
rs7815545	0.84[ASN][1000 genomes]
rs7824542	0.83[ASN][1000 genomes]
rs7828218	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv890717	chr8:35184361-35315188	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1024397	chr8:35296922-35424277	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35295400-35317000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:35305000-35313800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:35311800-35312600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr8:35311800-35315600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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