Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12874522	1.00[JPT][hapmap]
rs1326137	1.00[JPT][hapmap]
rs17070931	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1853706	0.91[EUR][1000 genomes]
rs1886977	1.00[JPT][hapmap]
rs2094196	1.00[JPT][hapmap]
rs2209380	0.92[ASN][1000 genomes]
rs2406694	1.00[JPT][hapmap]
rs2897437	0.92[ASN][1000 genomes]
rs4245345	0.92[ASN][1000 genomes]
rs4941618	1.00[JPT][hapmap]
rs4942720	1.00[JPT][hapmap]
rs4942721	1.00[JPT][hapmap]
rs6561414	1.00[JPT][hapmap]
rs7322313	0.84[ASN][1000 genomes]
rs7329615	1.00[JPT][hapmap]
rs7335797	1.00[JPT][hapmap]
rs753372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7981492	1.00[CHB][hapmap]
rs7982499	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990189	0.92[ASN][1000 genomes]
rs7991892	1.00[JPT][hapmap]
rs7995548	0.92[ASN][1000 genomes]
rs8001032	1.00[JPT][hapmap]
rs8002482	1.00[JPT][hapmap]
rs840432	1.00[JPT][hapmap]
rs9526419	1.00[JPT][hapmap]
rs9534884	1.00[JPT][hapmap]
rs9562769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9567925	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9567926	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9567927	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9567929	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv561589	chr13:48251736-48420218	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48391400-48411200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:48400200-48407400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:48403200-48403800	Enhancers	HSMMtube	muscle
4	chr13:48403200-48404400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:48403400-48404800	Enhancers	NHDF-Ad	bronchial
6	chr13:48403400-48405800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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