Variant report
| Variant | rs7982499 |
|---|---|
| Chromosome Location | chr13:48397318-48397319 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs12874522 | 1.00[JPT][hapmap] |
| rs1326137 | 1.00[JPT][hapmap] |
| rs17070931 | 0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1853706 | 0.91[EUR][1000 genomes] |
| rs1886977 | 1.00[JPT][hapmap] |
| rs2094196 | 1.00[JPT][hapmap] |
| rs2209380 | 0.92[ASN][1000 genomes] |
| rs2406694 | 1.00[JPT][hapmap] |
| rs2897435 | 0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2897437 | 0.92[ASN][1000 genomes] |
| rs4245345 | 0.92[ASN][1000 genomes] |
| rs4941618 | 1.00[JPT][hapmap] |
| rs4942720 | 1.00[JPT][hapmap] |
| rs4942721 | 1.00[JPT][hapmap] |
| rs6561414 | 1.00[JPT][hapmap] |
| rs7322313 | 0.84[ASN][1000 genomes] |
| rs7329615 | 1.00[JPT][hapmap] |
| rs7335662 | 1.00[CHD][hapmap] |
| rs7335797 | 1.00[JPT][hapmap] |
| rs753372 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7981492 | 1.00[CHB][hapmap] |
| rs7990189 | 0.92[ASN][1000 genomes] |
| rs7991892 | 1.00[JPT][hapmap] |
| rs7995548 | 0.92[ASN][1000 genomes] |
| rs8001032 | 1.00[JPT][hapmap] |
| rs8002482 | 1.00[JPT][hapmap] |
| rs9526419 | 1.00[JPT][hapmap] |
| rs9534884 | 1.00[JPT][hapmap] |
| rs9562769 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9567925 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9567926 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9567927 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs9567929 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3510679 | chr13:48236624-48498185 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv3510680 | chr13:48236624-48498185 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv561589 | chr13:48251736-48420218 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv561590 | chr13:48350699-48399027 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7982499 | MX1 | trans | brain | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:48391400-48411200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr13:48393200-48399800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 3 | chr13:48396800-48399800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
