Variant report

Variant	rs2897890
Chromosome Location	chr12:45943438-45943439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10161219	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs11183070	1.00[CEU][hapmap]
rs11183071	1.00[CEU][hapmap]
rs12228136	1.00[CEU][hapmap]
rs12231574	1.00[CEU][hapmap]
rs12811866	0.85[ASN][1000 genomes]
rs12832353	1.00[CEU][hapmap]
rs2897904	1.00[CEU][hapmap]
rs34485300	0.83[ASN][1000 genomes]
rs4768637	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv691	chr12:45896295-45946455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45940400-45943600	Enhancers	Fetal Thymus	thymus
2	chr12:45942600-45945200	Weak transcription	Esophagus	oesophagus
3	chr12:45943000-45944000	Enhancers	Dnd41	blood
4	chr12:45943200-45943600	Enhancers	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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