Variant report

Variant	rs12228136
Chromosome Location	chr12:45885163-45885164
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:45881557..45885323-chr12:45885771..45888559,3	MCF-7	breast:
2	chr12:45884919..45887471-chr12:46121844..46123759,2	MCF-7	breast:
3	chr12:45883877..45886088-chr12:45891473..45895322,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189079	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10748424	0.94[JPT][hapmap]
rs10880793	0.80[EUR][1000 genomes]
rs10880798	0.83[EUR][1000 genomes]
rs10880799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880800	0.83[EUR][1000 genomes]
rs10880803	0.81[EUR][1000 genomes]
rs10880804	0.81[EUR][1000 genomes]
rs10880805	0.81[EUR][1000 genomes]
rs10880807	0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs11183067	0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs11183068	0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs11183069	0.83[EUR][1000 genomes]
rs11183070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183071	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183072	0.83[EUR][1000 genomes]
rs12231574	0.85[EUR][1000 genomes]
rs12297127	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12303053	0.81[EUR][1000 genomes]
rs12303153	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12303449	0.81[EUR][1000 genomes]
rs12316574	0.83[EUR][1000 genomes]
rs12830355	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12830362	0.83[EUR][1000 genomes]
rs12832353	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2408253	0.86[ASN][1000 genomes]
rs2897890	1.00[CEU][hapmap]
rs2897904	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs33971594	0.81[EUR][1000 genomes]
rs34265125	0.83[EUR][1000 genomes]
rs34331166	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34865395	0.83[EUR][1000 genomes]
rs35296382	0.83[EUR][1000 genomes]
rs35449278	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4378456	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4567534	0.83[EUR][1000 genomes]
rs4590938	0.83[EUR][1000 genomes]
rs5001653	0.83[EUR][1000 genomes]
rs7316226	0.88[ASN][1000 genomes]
rs73285289	0.83[EUR][1000 genomes]
rs7484690	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv508672	chr12:45884730-45931091	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45885000-45885400	Enhancers	Colon Smooth Muscle	Colon
2	chr12:45885000-45885600	Enhancers	Stomach Smooth Muscle	stomach

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