Variant report

Variant	rs7484690
Chromosome Location	chr12:45882430-45882431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45881557..45885323-chr12:45885771..45888559,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10736027	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10748424	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10748425	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10785574	0.94[EUR][1000 genomes]
rs10785575	0.94[EUR][1000 genomes]
rs10785576	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10785578	0.91[EUR][1000 genomes]
rs10880791	0.93[EUR][1000 genomes]
rs10880792	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10880794	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10880799	0.96[ASN][1000 genomes]
rs11183062	0.93[EUR][1000 genomes]
rs11183064	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11183070	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11183071	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12228136	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12303153	0.88[ASN][1000 genomes]
rs12830355	0.96[ASN][1000 genomes]
rs12832353	0.88[ASN][1000 genomes]
rs17096009	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2408253	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2408254	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2408255	0.94[EUR][1000 genomes]
rs2408256	0.94[EUR][1000 genomes]
rs2408272	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2408318	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2408323	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2408325	0.98[EUR][1000 genomes]
rs2897889	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2897904	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2897905	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2897907	0.98[EUR][1000 genomes]
rs34331166	0.88[ASN][1000 genomes]
rs35449278	0.88[ASN][1000 genomes]
rs4378456	0.88[ASN][1000 genomes]
rs4444141	0.82[CEU][hapmap]
rs4570651	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4768090	0.91[EUR][1000 genomes]
rs4768091	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768620	0.92[EUR][1000 genomes]
rs4768623	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5003954	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56217910	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6582553	0.84[EUR][1000 genomes]
rs7133173	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7302122	0.97[EUR][1000 genomes]
rs7311901	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7316226	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7486952	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs7968560	0.92[CEU][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45882200-45882600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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