Variant report

Variant	rs12303153
Chromosome Location	chr12:45885657-45885658
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45884919..45887471-chr12:46121844..46123759,2	MCF-7	breast:
2	chr12:45883877..45886088-chr12:45891473..45895322,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189079	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10748424	0.85[ASN][1000 genomes]
rs10748425	0.85[ASN][1000 genomes]
rs10880792	0.85[ASN][1000 genomes]
rs10880793	0.80[EUR][1000 genomes]
rs10880798	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10880799	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10880800	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10880803	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10880804	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10880805	0.81[EUR][1000 genomes]
rs10880807	0.81[EUR][1000 genomes]
rs11183064	0.86[ASN][1000 genomes]
rs11183067	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11183068	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11183069	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11183070	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11183071	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11183072	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12228136	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12231574	0.85[EUR][1000 genomes]
rs12297127	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12303053	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12303449	0.81[EUR][1000 genomes]
rs12316574	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12320604	0.87[AFR][1000 genomes]
rs12321802	0.87[AFR][1000 genomes]
rs12830355	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12830362	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12832353	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408254	0.86[ASN][1000 genomes]
rs2408325	0.81[ASN][1000 genomes]
rs2897889	0.85[ASN][1000 genomes]
rs2897904	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2897907	0.81[ASN][1000 genomes]
rs33971594	0.81[EUR][1000 genomes]
rs34265125	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34331166	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34865395	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35296382	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35449278	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4378456	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4567534	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4590938	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs5001653	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7316226	0.80[ASN][1000 genomes]
rs73285289	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7484690	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv508672	chr12:45884730-45931091	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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